BQ623728

Overview
NameBQ623728
Unique NameBQ623728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+ LD+QTAT LFKL HKYRPETKQ K +RL+                      PVL  G+N +T LVE KKA+LVVIAHDVDPIE+V++LP LCRK G      K + ++G    ++ C
Sbjct:   84 TQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTKRP----PVLRAGVNTITSLVENKKAQLVVIAHDVDPIELVIFLPALCRKMGVPYCIVKGKARLGRLVHRKTC 199
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 60/110 (54.55%), Postives = 71/110 (64.55%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGK 331
            TKTLDK  AT+LFK+L KYRPE K AK +RLV                       V++YGLNHVT L+E+ KA+LVVIAHDVDPIE+VVWLP LCRK    + YC  +GK
Sbjct:   76 TKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPI-----VVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKM--EVPYCIVKGK 178
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+ LD+QTAT L KL HKYRPETKQ K QRL+                      PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:   84 TQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTC 199

HSP 2 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFN-RNADLRRAWGGQKLGAKSAAAL 512
            P+  +   P     + VPY I+K KARLG LVH+KT + +A T VN ED+             +N R  ++RR WGG  LG KS A +
Sbjct:  163 PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI 250
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+ LD+QTAT L KL HKYRPETKQ K QRL+                      PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:   84 TQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTC 199

HSP 2 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFN-RNADLRRAWGGQKLGAKSAAAL 512
            P+  +   P     + VPY I+K KARLG LVH+KT + +A T VN ED+             +N R  ++RR WGG  LG KS A +
Sbjct:  163 PIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI 250
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_MACFA (60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+ LD+QTAT L KL HKYRPETKQ K QRL+                      PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:   84 TQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTC 199

HSP 2 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFN-RNADLRRAWGGQKLGAKSAAAL 512
            P+  +   P     + VPY I+K KARLG LVH+KT + +A T VN ED+             +N R  ++RR WGG  LG KS A +
Sbjct:  163 PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI 250
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_HUMAN (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+ LD+QTAT L KL HKYRPETKQ K QRL+                      PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:   84 TQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTC 199

HSP 2 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFN-RNADLRRAWGGQKLGAKSAAAL 512
            P+  +   P     + VPY I+K KARLG LVH+KT + +A T VN ED+             +N R  ++RR WGG  LG KS A +
Sbjct:  163 PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI 250
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+ LD+QTAT L KL HKYRPETKQ K QRL+                      PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:   84 TQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTC 199

HSP 2 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFN-RNADLRRAWGGQKLGAKSAAAL 512
            P+  +   P     + VPY I+K KARLG LVH+KT + +A T VN ED+             +N R  ++RR WGG  LG KS A +
Sbjct:  163 PIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARI 250
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 59/110 (53.64%), Postives = 71/110 (64.55%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGK 331
            TKTLDK  AT+LFK+L KYRPE K AK +RL+                       V++YGLNHVT L+E+ KA+LVVIAHDVDPIE+VVWLP LCRK    + YC  +GK
Sbjct:   75 TKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPI-----VVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKM--EVPYCIVKGK 177
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_CHICK (60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 59/120 (49.17%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            ++ LD+QTAT L KL HKYRPETKQ K QRL+                      PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:   84 SQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKSKARLGRLVHRKTC 199

HSP 2 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFN-RNADLRRAWGGQKLGAKSAAAL 512
            P+  +   P     + VPY I+KSKARLG LVH+KT + +A T VN ED+             +N R  ++RR WGG  LG KS A +
Sbjct:  163 PIELVVFLPALCRKMGVPYCIIKSKARLGRLVHRKTCTCVAFTQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLGPKSVARI 250
[Close]
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 2 
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGK 331
            T+TLDK  AT LFK+L KYRPE K AK +RL+                       V++YGLNHVT L+E+ KA+LVVIAHDVDPIE+VVWLP LCRK    + YC  +GK
Sbjct:   77 TRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI-----VVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM--EVPYCIVKGK 179

HSP 2 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 3 
Query:  252 PLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFNRNAD-LRRAWGGQKLGAKSAAALPLR 521
            P+  +   P     ++VPY IVK KARLG++VHKKTASV+ LT+V  ED+             FN   D +R+ WGG  +G+KS A    R
Sbjct:  155 PIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAR 245
The following BLAST results are available for this feature:
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A_TAKRU3.994e-2348.3360S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A1_ARATH3.994e-2354.5560S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A_RAT6.812e-2350.0060S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]
RL7A_MOUSE6.812e-2350.0060S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]
RL7A_MACFA6.812e-2350.0060S ribosomal protein L7a OS=Macaca fascicularis G... [more]
RL7A_HUMAN6.812e-2350.0060S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
RL7A_BOVIN6.812e-2350.0060S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]
RL7A2_ARATH6.812e-2353.6460S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A_CHICK1.162e-2249.1760S ribosomal protein L7a OS=Gallus gallus GN=RPL7... [more]
RL7A_ORYSJ1.982e-2252.7360S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623728 ID=BQ623728; Name=BQ623728; organism=Citrus sinensis; type=EST; length=522bp
TACAAAGACTCTGGACAAGCAAACTGCAACCACTTTGTTCAAGCTGTTGC
ACAAATACAGACCAGAGACCAAGCAAGCCAAGCACCAAAGACTCGTTGCT
GCTGCCAAGGCTGCTGCTGAGGACAAGAAGGGTGAGAAGAAAGCAGAGGC
TCCCAAGTCTGGACCAGTTCTTGAATATGGACTTAACCACGTCACTGGCC
TCGTTGAAAAGAAGAAGGCAAAATTAGTTGTTATTGCCCACGATGTTGAT
CCCATTGAGATCGTTGTGTGGTTACCCACCCTCTGCCGAAAGTTTGGATG
TTCCCTACGTTATTGTAAAGAGCAAGGCAAGATTGGGAGCTTTGGTGCAC
AAGAAGACTGCTTCCGTCATTGCCCTTACGAGTGTGAATAAGGAGGACCA
AAAAGATTTGACGACCCTCACTTCTCTTGCCCTCGATACGTTCAACAGAA
ATGCTGATCTCAGAAGAGCTTGGGGAGGACAAAAGCTTGGAGCTAAATCT
GCTGCAGCTCTTCCTTTACGAG
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