BQ623736

Overview
NameBQ623736
Unique NameBQ623736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623736_ssr96 microsatellite BQ623736_ssr96:96..107. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig38 contig Csv1_Contig38:1..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623736 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 3 
Query:  147 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIXXXXXXXXXXXXXFCGKKVPSGFQC 395
            CPRD LKLGVCA+VLN + ++V+G+PP  PCCSL++GLV+LEAAVCLCTAIKANILG               CGK+VP+GF+C
Sbjct:   54 CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136
[Close]
BLAST of BQ623736 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 3 
Query:  144 TCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIXXXXXXXXXXXXXFCGKKVPSGFQC 395
            TCP D LKLG C +VL  L+H+ +G   K  CC L+ GLVDL+AA+CLCT I+  +L I              CGK  P  F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
[Close]
BLAST of BQ623736 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.947e-14
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 3 
Query:  147 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIXXXXXXXXXXXXXFCGKKVPSGFQC 395
            CP D LKL VCA VL     + VG P    CC L++GLVDL+AA+CLCTAIKAN+LGI              CG+  P  F C
Sbjct:   48 CPIDALKLKVCAKVLG---LVKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127
The following BLAST results are available for this feature:
BLAST of BQ623736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA9.141e-2461.4514 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC9.162e-1645.2436.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE2.947e-1449.40Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00827 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00827 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623736 ID=BQ623736; Name=BQ623736; organism=Citrus sinensis; type=EST; length=553bp
TAGATATGGCAAGGGTTCTACTAGCACCAACTGCCCTTCTCCTTTCCCTC
AACCTCATCTTCTTCACTTTGGTTAGCTCTACTTATGTACCCTGCCCACC
ACCACCACCTAAGAGCCACAAGCACCCACCTGCCCCCAAGCCCACTTGCC
CTAGGGATACCCTAAAGTTGGGTGTATGTGCTAATGTGTTGAATGATTTG
GTGCACCTTGTTGTTGGAACCCCACCAAAGACTCCTTGCTGCAGCCTAAT
TAAAGGTTTGGTTGATCTTGAAGCCGCTGTTTGCCTTTGCACTGCCATTA
AAGCCAATATCTTAGGCATTAACCTCAATGTGCCTGTTTCACTTAGCTTG
TTGCTCAATTTCTGCGGAAAGAAAGTCCCTTCCGGCTTCCAATGCGCTTA
AATCAGCTAATCAGCTATTTGTTGCCATCAATTTATTTCTAGCCATTTTT
TTGCGTTGTTTAATCGATCCATTTCAATGTGTGTTTGTATTATGTGTACT
TTTTTTCTTTTTTTTAAACGAAGAAGATGAGGGGAGGACAAAACTGAAAT
TCA
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