BQ623749

Overview
NameBQ623749
Unique NameBQ623749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623749_ssr52 microsatellite BQ623749_ssr52:52..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL4_HUMAN (DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  266 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQ 571
            FY YA  +  ++ PEG+E  C DI V   +V +L+LAWK+ A+  GYFTL+EW +G+ +L+ DT  KL+  L  L   +   TNF+  Y +AF +   ++++
Sbjct:  110 FYEYAG-TDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQR 210          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL4_MOUSE (DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  266 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQ 571
            FY YA      + PEG+E  C DI V   +V +L+LAWK+ A+  GYFTL+EW +G+ +L+ DT  KL+  L  L   +   TNF+  Y +AF +   ++++
Sbjct:  110 FYEYAGTEDA-VGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRTTLDYLRSLLNDTTNFKLIYRYAFDFAREKDQR 210          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_XENTR (DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1d3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  245 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            ++RI+ LF+ Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT  E+  G KA+ AD +  +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   87 VQRIEELFWRYKDEREDAILEEGMERFCNDLYVDPTEFRVLVLAWKFQAATMCKFTRREFFEGCKAINADGIEGICARFPSLLNEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 211          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL4_DANRE (DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  266 FYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQ 571
            FY YA     ++ PEG+E  C DI V   +V +L+LAWK+ A+  GYFTL+EW +G+ +L+ D+  KL+ +L  L   +   T+F+  Y +AF +   ++++
Sbjct:   98 FYEYAG-CDDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQSMGYFTLQEWLKGMGSLQCDSTEKLRNSLDYLRSVLNDATSFKLIYRYAFDFAREKDQR 198          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_RAT (DCN1-like protein 3 OS=Rattus norvegicus GN=Dcun1d3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  191 TDATDLFRXXXXXXXXXEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            T + D  R          ++R++ LF  Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT +E+  G KA+ AD+++ +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   70 TSSGDAGRESKTNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 212          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_PONAB (DCN1-like protein 3 OS=Pongo abelii GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  191 TDATDLFRXXXXXXXXXEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            T + D  R          ++R++ LF  Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT +E+  G KA+ AD+++ +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   70 TSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 212          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_MOUSE (DCN1-like protein 3 OS=Mus musculus GN=Dcun1d3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  191 TDATDLFRXXXXXXXXXEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            T + D  R          ++R++ LF  Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT +E+  G KA+ AD+++ +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   70 TSSGDAGRESKTNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 212          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_HUMAN (DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  191 TDATDLFRXXXXXXXXXEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            T + D  R          ++R++ LF  Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT +E+  G KA+ AD+++ +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   70 TSSGDAGRESKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 212          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_BOVIN (DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  191 TDATDLFRXXXXXXXXXEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            T + D  R          ++R++ LF  Y ++    I  EG+E  C+D+ V  T+ R+L+LAWK +A     FT +E+  G KA+ AD+++ +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   70 TSSGDAGREPKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 212          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCNL3_XENLA (DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  245 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQRV*T*RVSANYWGLV 616
            ++RI+ LF  Y ++    I  EG+E  C D+ V  T+ R+L+LAWK +A     FT  E+  G K++ AD +  +    P L  E K+   F+D Y F F++ L +EE QR     ++   W LV
Sbjct:   87 LQRIEELFRRYKDEREDAILEEGMERFCDDLCVDPTEFRVLVLAWKFQAATMCKFTRREFFEGCKSINADGIESICSQFPGLLNEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLV 211          
The following BLAST results are available for this feature:
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DCNL4_HUMAN1.367e-1639.22DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=... [more]
DCNL4_MOUSE3.046e-1639.22DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=... [more]
DCNL3_XENTR1.512e-1536.00DCN1-like protein 3 OS=Xenopus tropicalis GN=dcun1... [more]
DCNL4_DANRE1.975e-1537.25DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4... [more]
DCNL3_RAT3.368e-1532.87DCN1-like protein 3 OS=Rattus norvegicus GN=Dcun1d... [more]
DCNL3_PONAB3.368e-1532.87DCN1-like protein 3 OS=Pongo abelii GN=DCUN1D3 PE=... [more]
DCNL3_MOUSE3.368e-1532.87DCN1-like protein 3 OS=Mus musculus GN=Dcun1d3 PE=... [more]
DCNL3_HUMAN3.368e-1532.87DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=... [more]
DCNL3_BOVIN3.368e-1532.87DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 ... [more]
DCNL3_XENLA9.800e-1535.20DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00840 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00840 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623749 ID=BQ623749; Name=BQ623749; organism=Citrus sinensis; type=EST; length=617bp
GGAGCAAGCAAAAAATCAAAAAAGCAAAAGCAACAGAGAGCGTGATCATC
ATCGTCGTCGTCGAATCATATTATAAGCTTTTAAATTAAAAGAGCGACGA
AGCTTCTTCGTTCGCTTCTCCCATCCGACGTTCGTATTTTTTCAAATTAT
GCGTCGTTCTGTATCGAGAAAAACGGGTCAAACTAATTCAACCGACGCCA
CGGATCTCTTTCGCTCCGCCTCAAGTAAAGCATCTTCGAAAGAGATGGAA
CGAATCGATAACCTGTTTTATTCGTATGCGAATAAGTCTTCTGGCATGAT
TGACCCAGAAGGAATTGAAAGTCTGTGTTCAGATATCGAAGTCAGTCATA
CTGATGTTCGGATCTTGATGCTTGCTTGGAAAATGAAAGCGGAAAAGCAA
GGGTATTTTACTCTGGAGGAATGGCGGAGAGGCCTAAAAGCATTGAGGGC
TGACACTGTAAATAAATTAAAGAAGGCCCTTCCTGATCTGGAGAAAGAGG
TGAAGAGGCCAACAAACTTTCAAGATTTCTATGCTTTTGCATTCCGGTAT
TGCTTAACAGAGGAGAAACAAAGAGTGTAGACATAGAGAGTGTCTGCGAA
TTACTGGGGTCTTGTTT
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