BQ623753

Overview
NameBQ623753
Unique NameBQ623753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:99..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623753 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.370e-44
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 3
Query:   51 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 362
            E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAP
Sbjct:   17 EAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117          
BLAST of BQ623753 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.818e-43
Identity = 87/105 (82.86%), Postives = 91/105 (86.67%), Query Frame = 3
Query:   51 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 362
            E  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAP
Sbjct:   17 EAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAP 119          
BLAST of BQ623753 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   66 ILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 362
            I+GA  A    G   R   F+     R+ +   V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   P
Sbjct:   26 IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIP 124          
BLAST of BQ623753 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.753e-13
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  129 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 362
            R+A+T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   P
Sbjct:   52 RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIP 124          
BLAST of BQ623753 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.910e-11
Identity = 40/91 (43.96%), Postives = 47/91 (51.65%), Query Frame = 3
Query:   93 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 362
            P G S   SF V A      K+G     W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + P
Sbjct:   38 PVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLP 112          
The following BLAST results are available for this feature:
BLAST of BQ623753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CB13_SOLLC1.370e-4484.62Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA9.818e-4382.86Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY7.332e-1443.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.753e-1349.37Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA9.910e-1143.96Chlorophyll a-b binding protein P4, chloroplastic ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00844 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00844 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623753 ID=BQ623753; Name=BQ623753; organism=Citrus sinensis; type=EST; length=404bp
AAAAAATGGCAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTG
GAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGG
GTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTG
TTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTT
TCATACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGG
TCTCTCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGG
CCTACGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGA
GCCATTGCACCGGGAGATTCTTGGCAAGGCAGGCCTCATTTCCGCAAGAA
ACTG
back to top