BQ623759

Overview
NameBQ623759
Unique NameBQ623759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2295 contig Csv1_Contig2295:54..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.229e-45
Identity = 92/124 (74.19%), Postives = 101/124 (81.45%), Query Frame = 2
Query:   50 FTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 412
            FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   17 FTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.193e-45
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = 2
Query:   41 QPPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 412
            +P FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   12 KPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.227e-44
Identity = 88/125 (70.40%), Postives = 101/125 (80.80%), Query Frame = 2
Query:   47 PFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 412
            PF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:   12 PFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.662e-44
Identity = 87/127 (68.50%), Postives = 101/127 (79.53%), Query Frame = 2
Query:   41 QPPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 412
            +P FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   12 KPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.953e-44
Identity = 90/125 (72.00%), Postives = 100/125 (80.00%), Query Frame = 2
Query:   50 FTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 412
            FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   17 FTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.241e-38
Identity = 79/120 (65.83%), Postives = 91/120 (75.83%), Query Frame = 2
Query:   62 KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 412
            KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:   21 KSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.094e-32
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   56 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 409
            +++S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:   19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of BQ623759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH3.229e-4574.19Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU7.193e-4569.29Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC1.227e-4470.40Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC4.662e-4468.50Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM7.953e-4472.00Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL2.241e-3865.83Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU4.094e-3257.98Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00850 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00850 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623759 ID=BQ623759; Name=BQ623759; organism=Citrus sinensis; type=EST; length=550bp
ATGGCAGCCTCAGTGATGGCTTCTTCGTTGAGCCTGAAACCAGCCTCCTT
TCACTGTGGAGAAATCAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAACT
TCATTCAAAATTGTGGCTAAAGGCGGCAAGATCAAAACCGACAAACCCTA
TGGAGTAAATGGTGGTATGGATTTGAGGGAAGGTCTGGATGCATCCGGCA
GGAAGGCTAAGGGGAAAGGTGTTTACCAATTTGTTGACAAGTACGGTGCC
AATGTTGATGGATACAGTCCTATCTACAATGAGAACGACTGGTCTCCCAG
TGGTGATGTCTATACTGGTGGTGCAACTGGCTTGGCAATCTGGGCTGTTA
CTCTTGCCGGTCTTCTTGCAGGAGGAGCACTTCTCGTCTACAACACAAGT
GCTTTGGCACAGTAGATGAATTTCAATCAATGTTACATTATTATCTCTAT
TTTGTATAACTTGGCAATGTTGCTGTTAAATGTACCTTCCACAGCTACTT
CGTGTATCTATTTTGTGTAATGTTTTGGGGGGATTTAAATTGAGACTATA
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