BQ623762

Overview
NameBQ623762
Unique NameBQ623762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623762_ssr485 microsatellite BQ623762_ssr485:485..496. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: BABL_LILLO (Chemocyanin OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.720e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:   41 IVLLFLRFHSTEATST-FTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYFICSIPGHCEAGLKLAVDAS 370
            +VL+FL F+   A S  +TVGD  GWT+    W  GK F+AGD L+F Y+ ++HNV  V    Y+SC ASP S+ F SG D+I LS+G NYFICS+PGHC+ GLK+AV A+
Sbjct:   16 VVLVFLVFNCEVAESVVYTVGDGGGWTFGTSGWPAGKTFRAGDVLVFKYNPAVHNVVSVPAGGYKSCTASPGSRVFKSGDDRITLSRGTNYFICSVPGHCQGGLKIAVTAA 126          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: BABL_ARATH (Basic blue protein OS=Arabidopsis thaliana GN=At2g02850 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.954e-27
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 2
Query:    5 SASQATTVAATLIVLLFLRFHSTEA-TSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYFICSIPGHCEAGLKLAVDA 367
            SAS +     TL+ +  L   +     +T+TVGD+  WT+N   W  GK F+AGD L+FNY+  +HNV  VD  +Y +C+    +K ++SGKD+I LSKG+N+FIC+ P HCE+ +K+AV A
Sbjct:    7 SASWSARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRAGDVLVFNYNPRMHNVVKVDSGSYNNCKTPTGAKPYTSGKDRITLSKGQNFFICNFPNHCESDMKIAVTA 128          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: BABL_CUCSA (Basic blue protein OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.083e-27
Identity = 47/95 (49.47%), Postives = 72/95 (75.79%), Query Frame = 2
Query:   83 STFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYFICSIPGHCEAGLKLAVDA 367
            + + VG + GWT+N +SW  GK+F+AGD L+FNY+  +HNV VV+   + +C     +K ++SG+DQIKL KG++YFIC+ PGHC++G+K+AV+A
Sbjct:    1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPKGQSYFICNFPGHCQSGMKIAVNA 95          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:   95 VGDTSGWT----YNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYFICSIPGHCEAGLKLAV 361
            VGD++GWT    Y+   WA+  +F  GD+L+FNY+   HNV  VD   ++SC +S  + S++SG D I L + G  YF+C IPGHC+ G K+ +
Sbjct:    6 VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEI 99          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 2
Query:   83 STFTVGDTSGWTY--NIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYFICSIPGHCEAGLKLAV 361
            + +TVGDTSGW    +  +WA+ K F  GD+L+FNY A  H V  V  ++Y+SC +  +  + S+G   I L K G++YFIC +PGH   G+KL++
Sbjct:   25 TVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSI 120          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.213e-16
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   83 STFTVGDTSGWTYNI-------QSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKL-SKGRNYFICSIPGHCEAGLKLAVDAS 370
            + +TVGD++GW             WA+ K F  GD L+F YD   HNV  V   NYQSC  +    S+++G ++I L + G+ Y+IC +P HC+ G K+ ++ +
Sbjct:    1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINVT 104          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: BCB2_ARATH (Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.421e-16
Identity = 51/116 (43.97%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   26 VAATLIVLLFLRFHSTEATSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYFICSIPGHC--EAGLKLAVD 364
            VAA   +LL L         T+T+  T+G  Y+   WA GK F+ GD L F Y +S H V VVD   Y  C AS ++++ S G  +I L   G NYFICS PGHC    G+KLAV+
Sbjct:   11 VAAATALLLVLTIVPGAVAVTYTIEWTTGVDYS--GWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDASSSTENHSDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVN 123          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   23 TVAATLIVLLFLRFHSTEATST--FTVGDTSGWTYNIQS--WANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFS--SGKDQIKLSKGRNYFICSIPGHCEAGLKLAV 361
            TV  T +VL FL        +   +TVG+   W  NI    WA GK F  GD L F +D + HN+  V+  +Y+ C A    ++++  +G+D + L++ ++Y++    G C  G+KL+V
Sbjct:    5 TVLITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSV 123          
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.136e-11
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 2
Query:    8 ASQATTVAATLIVLLFLRFHSTEATSTFTVGDTSG-W------TYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYFICSIPGHCEAGLKLAV 361
            AS +  VA   ++ LF    S  A +  TVG  SG W      +Y+   WA   +FK GD ++F Y++   +V  V    Y SC  +    +++ G+ ++KL + G  YFI    GHCE G KL++
Sbjct:    8 ASSSLHVAIFSLIFLF----SLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSL 129          
The following BLAST results are available for this feature:
BLAST of BQ623762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BABL_LILLO6.720e-3053.15Chemocyanin OS=Lilium longiflorum PE=1 SV=1[more]
BABL_ARATH6.954e-2744.26Basic blue protein OS=Arabidopsis thaliana GN=At2g... [more]
BABL_CUCSA9.083e-2749.47Basic blue protein OS=Cucumis sativus PE=1 SV=1[more]
MAVI_CUCPE2.028e-1843.62Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
BCP_PEA2.929e-1742.71Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
STEL_RHUVE7.213e-1636.54Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
BCB2_ARATH9.421e-1643.97Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 ... [more]
LAML_ARATH1.839e-1132.77Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
ENL1_ARATH3.136e-1133.33Early nodulin-like protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00853 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00853 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623762 ID=BQ623762; Name=BQ623762; organism=Citrus sinensis; type=EST; length=498bp
ATGCAGTGCAAGCCAAGCCACAACTGTTGCAGCCACCTTGATTGTTTTGC
TCTTTCTTCGGTTTCATAGTACTGAGGCAACCAGTACTTTCACCGTCGGT
GACACTTCAGGCTGGACCTACAACATTCAAAGTTGGGCCAATGGCAAACA
GTTTAAGGCCGGCGACACACTCATTTTCAACTATGACGCATCGATTCACA
ATGTAGCAGTTGTTGATGGGAATAACTACCAGAGCTGCAGGGCTTCACCA
ACCTCGAAGAGTTTCTCCAGCGGAAAAGATCAAATCAAACTATCAAAGGG
ACGTAACTATTTCATTTGTAGTATCCCTGGCCATTGCGAAGCTGGCCTGA
AGCTTGCTGTTGATGCTTCTTGAGCTACAATTATCACTGTTGCTTTAATT
AATCTCCAAATTCTCAAGAAAAAGCTGGCTTCGATGTCTTCATGAACTGC
TTAATATTGCACAAAGCTGAGGATGGGTTAATAAAATAATAATAATCA
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