BQ623764

Overview
NameBQ623764
Unique NameBQ623764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3974 contig Csv1_Contig3974:305..779. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_WHEAT (Cytochrome b6-f complex subunit 5 OS=Triticum aestivum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_VITVI (Cytochrome b6-f complex subunit 5 OS=Vitis vinifera GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_TOBAC (Cytochrome b6-f complex subunit 5 OS=Nicotiana tabacum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SPIOL (Cytochrome b6-f complex subunit 5 OS=Spinacia oleracea GN=petG PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SOYBN (Cytochrome b6-f complex subunit 5 OS=Glycine max GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SORBI (Cytochrome b6-f complex subunit 5 OS=Sorghum bicolor GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SOLTU (Cytochrome b6-f complex subunit 5 OS=Solanum tuberosum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SOLLC (Cytochrome b6-f complex subunit 5 OS=Solanum lycopersicum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SOLBU (Cytochrome b6-f complex subunit 5 OS=Solanum bulbocastanum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_SACOF (Cytochrome b6-f complex subunit 5 OS=Saccharum officinarum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
The following BLAST results are available for this feature:
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PETG_WHEAT1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Triticum aest... [more]
PETG_VITVI1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Vitis vinifer... [more]
PETG_TOBAC1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Nicotiana tab... [more]
PETG_SPIOL1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Spinacia oler... [more]
PETG_SOYBN1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Glycine max G... [more]
PETG_SORBI1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Sorghum bicol... [more]
PETG_SOLTU1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Solanum tuber... [more]
PETG_SOLLC1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Solanum lycop... [more]
PETG_SOLBU1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Solanum bulbo... [more]
PETG_SACOF1.765e-13100.00Cytochrome b6-f complex subunit 5 OS=Saccharum off... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00855 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00855 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623764 ID=BQ623764; Name=BQ623764; organism=Citrus sinensis; type=EST; length=474bp
AAGAACATATTTCCTTTAGCTCTGTCATGCTTACTATAACTAGTTATTTT
GGTTTTCTACTAGCGGCTTTAACTATAACCTCGGCTCTATTTATTGGTCT
GAGTAAGATAGGACTTATTTGAAATTAATTGAAGGAATAATTCATAAAAA
GAAACCCTTCTGTGGTATTCCACATATTGTCTAGTTCCTTACCGTACCAC
GTTAATTACCAATTATTGGTTATTGAGATTCCTAGGCAAGGCAGATTAAT
ATTTAGGAATAGATATTACCTCTCTTTTTAACCTTTCAAATAAAAAAAAA
ATAAATAAAATTCAAATGATTGAAGTCTTTCTATTTGGAATCGTCTTAGG
TCTAATTCCTATTACTTTGGCTGGATTATTCGTAACCGCCTATTTACAAT
ACAGACGTGGTGATCAGTTGGACCTTTGATTAATTAACATCTCTTTTTTT
AACTGACCCCTCCCTTCTTTAATT
back to top