BQ623767

Overview
NameBQ623767
Unique NameBQ623767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1507 contig Csv1_Contig1507:262..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623767 vs. ExPASy Swiss-Prot
Match: HAP28_RAT (28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus GN=Pdap1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:   39 QKRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 263
            QKRKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
[Close]
BLAST of BQ623767 vs. ExPASy Swiss-Prot
Match: HAP28_MOUSE (28 kDa heat- and acid-stable phosphoprotein OS=Mus musculus GN=Pdap1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:   39 QKRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 263
            QKRKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
[Close]
BLAST of BQ623767 vs. ExPASy Swiss-Prot
Match: HAP28_HUMAN (28 kDa heat- and acid-stable phosphoprotein OS=Homo sapiens GN=PDAP1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:   39 QKRKGTQGXXXXXXXXXXXXXXVKAKDVDMGKTTELSRREREEIEKQKAHERYMRLQEQGKTEQARKDLERLALI 263
            QKRKG +G               K   +D+    ELSRREREEIEKQKA ERYM++   GKTEQA+ DL RLA+I
Sbjct:   72 QKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAII 146
The following BLAST results are available for this feature:
BLAST of BQ623767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HAP28_RAT1.340e-1252.0028 kDa heat- and acid-stable phosphoprotein OS=Rat... [more]
HAP28_MOUSE1.340e-1252.0028 kDa heat- and acid-stable phosphoprotein OS=Mus... [more]
HAP28_HUMAN1.340e-1252.0028 kDa heat- and acid-stable phosphoprotein OS=Hom... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00858 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00858 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623767 ID=BQ623767; Name=BQ623767; organism=Citrus sinensis; type=EST; length=571bp
AGGAACAAGAAGAGTCGGGAGAGGAAGAGGAAGAAAATCAGAAGAGGAAA
GGCACCCAGGGAATTATTGAGATTGAGAATCCTAATATAGAAAAACCTAA
GAATGTGAAGGCTAAAGATGTTGATATGGGGAAAACAACTGAGCTCTCAA
GGCGTGAAAGAGAGGAGATTGAGAAGCAAAAAGCTCACGAGCGATATATG
AGGCTTCAAGAACAAGGGAAAACAGAACAAGCAAGAAAGGATTTAGAGCG
CTTGGCCCTGATACGTCAACAAAGGGCTGAAGCTGCCAAGAAGCGAGAGG
AAGAGAAGGCTGCCAAAGAGCAGAAAAAAACTGAAGCTCGGAAGTGAAAA
GAACCCAGAGGATAGTAAGTTGCATCTAATTTTCTTTATTCAAAGGAAAG
AACCCTATCGTTTGTTTACTTAAGCTTCTGAGCAACAAGAAGAGAAAAAA
TAAAAAGAAGCAGAAGCTGATAAATTTCACTTCCCTTCATAATTATTAGA
AACATATAGTTATATCATTTGGGGCATCCGAAATTTTTATCTGAGTAACT
CTGTTTTACCACCTATGAAGT
back to top