BQ623783

Overview
NameBQ623783
Unique NameBQ623783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623783_ssr56 microsatellite BQ623783_ssr56:56..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10809 contig Csv1_Contig10809:468..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.460e-54
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K YQ+LS+AL KMFSSFTIGN G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW+MFVDSCKR+RIMKGSEAIGLAPRA+EKCKNRS
Sbjct:  140 KTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          

HSP 2 Score: 43.1282 bits (100), Expect = 8.460e-54
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 2
Query:    5 KNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DL+
Sbjct:   82 KNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLK 137          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.512e-52
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAI--GLAPRAVEKCKNRS 435
            K+Y+ELSD+LGKMFSSFT GNC SQGMKDFMNESKL DLLN SDYVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKG EAI  GLAPRA+ KCKNRS
Sbjct:  145 KSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          

HSP 2 Score: 47.3654 bits (111), Expect = 4.512e-52
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN++AVQK   E   K       N +FVKVSMDGAPYLRKVDL+
Sbjct:  102 KNMLAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLK 142          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.080e-50
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K+Y ELS AL KMFSSFTIGNCGS G+   MNESK+ DLLNGS+YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRA+EKCKNRS
Sbjct:  182 KSYLELSKALEKMFSSFTIGNCGSHGVNG-MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          

HSP 2 Score: 47.3654 bits (111), Expect = 4.080e-50
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 2
Query:    5 KNIMAVQ----KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KNI+AVQ    KD  +G            AFVKVSMDGAPYLRKVDL+
Sbjct:  132 KNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLK 179          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.005e-49
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            +Y++LSDAL KMFSSFT+G+ G+QGM DFMNESK++DLLN S+YVP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRA+EK KNRS
Sbjct:  133 SYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          

HSP 2 Score: 48.9062 bits (115), Expect = 2.005e-49
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDL+
Sbjct:   88 KNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLK 129          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.066e-47
Identity = 81/98 (82.65%), Postives = 93/98 (94.90%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK-CKNRS 435
            K+YQ+LSDAL KMFSSFT+GN G+QGM DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEA+GLAPRA+EK CKNRS
Sbjct:  146 KSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243          

HSP 2 Score: 38.1206 bits (87), Expect = 1.066e-47
Identity = 24/50 (48.00%), Postives = 29/50 (58.00%), Query Frame = 2
Query:    5 KNIMAVQKDN---EEGDNKAXXXXXXNVA---FVKVSMDGAPYLRKVDLE 136
            KN+M  QK +   EE  ++         A    VKVSMDGAPYLRKVDL+
Sbjct:   94 KNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLK 143          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.507e-43
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIG-NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K+Y ELS+AL  MFSSFT+G + G +GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGLAPRA+EKCK+R+
Sbjct:  132 KSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229          

HSP 2 Score: 39.6614 bits (91), Expect = 2.507e-43
Identity = 22/43 (51.16%), Postives = 26/43 (60.47%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDL 133
            KN+M   + +  G   A        AFVKVSMDGAPYLRK+DL
Sbjct:   94 KNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDL 128          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.875e-39
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 1
Query:  136 SYTKAYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL--APRAVEKCKNRS 435
            SYT  Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDWMLVGDVPW+MF+D CK+L+IMKG +AIGL  APRA+EK K R+
Sbjct:  236 SYTN-YGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMRA 338          

HSP 2 Score: 39.2762 bits (90), Expect = 9.875e-39
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 2
Query:    5 KNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLEA 139
            KN +A   K+++E D +          FVKVSMDGAPYLRKVDL +
Sbjct:  195 KNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLRS 236          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 9.887e-39
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K+Y ELS AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPW+MF+ SCK+LRIMK SEAIGLAPR +EKC++R+
Sbjct:  207 KSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          

HSP 2 Score: 38.1206 bits (87), Expect = 9.887e-39
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDN------KAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN MA  +  + G+N      +A         +VKVSM+GAPYLRK+DL+
Sbjct:  155 KNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLK 204          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.654e-36
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K Y+ELS AL KMFS FT+G+  S G   +D +++ +L+DL NG++ V TYEDKD DWMLVGDVPW MF DSC+RLRIMKGS+A+GLAPRA +K KNR+
Sbjct:  168 KNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          

HSP 2 Score: 41.9726 bits (97), Expect = 5.654e-36
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 2
Query:    5 KNIMAVQKDNEEG--DNKAXXXXXXNVAFVKVSMDGAPYLRKVDLEAIQKPTKNSL 166
            KN MA+ +   +G  D +A         +VKVSMDGAPYLRKVDL+  +   + SL
Sbjct:  120 KNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSL 175          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.613e-36
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKN 429
            K+Y ELS A   MF+SFTIG CGS   +     +KL D L   +YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRAVEKCK+
Sbjct:  144 KSYPELSMAFQNMFTSFTIGKCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233          

HSP 2 Score: 35.4242 bits (80), Expect = 9.613e-36
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 2
Query:   80 AFVKVSMDGAPYLRKVDL 133
            A VKVSMDGAPYLRK+D+
Sbjct:  123 ALVKVSMDGAPYLRKIDV 140          
The following BLAST results are available for this feature:
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
IAA16_ARATH8.460e-5490.72Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
AUX28_SOYBN4.512e-5285.86Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA30_ORYSJ4.080e-5084.54Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA14_ARATH2.005e-4981.25Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA7_ARATH1.066e-4782.65Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA17_ARATH2.507e-4374.49Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA9_ARATH9.875e-3968.27Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA27_ARATH9.887e-3969.70Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA21_ORYSJ5.654e-3663.64Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA11_ORYSJ9.613e-3671.58Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00874 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00874 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623783 ID=BQ623783; Name=BQ623783; organism=Citrus sinensis; type=EST; length=672bp
GGGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGACCTTGAAGCTATACAAAAGCC
TACCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCAT
TGGTAACTGTGGGTCTCAAGGGATGAAGGATTTTATGAATGAGAGCAAAC
TGATTGATCTTTTGAATGGCTCAGATTATGTACCTACTTATGAAGACAAA
GATGGAGATTGGATGCTTGTTGGTGATGTACCATGGGATATGTTTGTTGA
TTCATGCAAACGCTTAAGAATAATGAAAGGATCCGAGGCCATTGGACTTG
CACCAAGGGCAGTTGAGAAGTGCAAGAACAGAAGCTGAAGATTGATTATG
ATCAGCAACTTTTTGCCAAAAGCAGCTTGTTAAAAAAGCTGATTTCAAAA
CCAAAAGGGCAAACCGGCTTGTTGAGGAATCAAGCAGGGAGAGTTTGGAT
GTGCTTATGTATCATGCGGTTTTTTTTTTCTTTTCTCTTTTTTGGGGTTT
TGGTTTTAAAATGTTAGTAATTAGTAGAGAGTTGGAATATATTCTGAGAG
AGATTTGTTTAGTGACCAGAAG
back to top