BQ623787

Overview
NameBQ623787
Unique NameBQ623787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:223..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.344e-59
Identity = 114/138 (82.61%), Postives = 120/138 (86.96%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 415
            IRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:   36 IRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 9.591e-59
Identity = 114/138 (82.61%), Postives = 120/138 (86.96%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 415
            IRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:   36 IRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.119e-58
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            +RKLPLTKAKRYLEDV+AHKQAIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:   36 LRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.873e-57
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            +RK+PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   36 LRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.772e-55
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            +R++PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   36 LRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.804e-42
Identity = 85/117 (72.65%), Postives = 98/117 (83.76%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+K+ + KA RYL+DV+A KQ IPF RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:   36 IKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.102e-38
Identity = 85/137 (62.04%), Postives = 97/137 (70.80%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSK 412
            IRK+PL +A RYL++V   K+ IPF RF GGVGR AQAK +    QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   36 IRKMPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKK 171          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.440e-38
Identity = 80/117 (68.38%), Postives = 92/117 (78.63%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            I+ + L KA RYL DV+  KQ IPF RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:   36 IKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.208e-38
Identity = 84/137 (61.31%), Postives = 98/137 (71.53%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSK 412
            IRK+PL +A RYL++V+  K+ IPF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   36 IRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKK 171          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.189e-38
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   36 IKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL171_ARATH7.344e-5982.6160S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL172_ARATH9.591e-5982.6160S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL17_MAIZE8.119e-5890.6060S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU6.873e-5788.8960S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU3.772e-5586.3260S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA2.804e-4272.6560S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_LONON1.102e-3862.0460S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_SUBDO1.440e-3868.3860S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_BOMMO3.208e-3861.3160S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_HUMAN4.189e-3866.6760S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00878 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00878 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623787 ID=BQ623787; Name=BQ623787; organism=Citrus sinensis; type=EST; length=572bp
CATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATGTTA
TGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTTGGA
CGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATGGCC
TGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGAGTA
ATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCACATC
CAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCATGG
AAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCTTAT
CTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCAACT
AGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAGAGT
GCCCTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACCTTT
AATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGTTTA
TTTCATATTACGTCCCAGTTTA
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