BQ623792

Overview
NameBQ623792
Unique NameBQ623792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2210 contig Csv1_Contig2210:78..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623792 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.161e-27
Identity = 66/124 (53.23%), Postives = 75/124 (60.48%), Query Frame = 2
Query:   35 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 400
            MA ITAS   S +  + LVH   +  SSSP+LGLP+   + KV CS+E KPS  E+ T  N                      LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of BQ623792 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   35 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 397
            MA+ TAS  T S     L+ KP+ VA S+PVLGLP    K G VRCSME   +KQ + + +G                     LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of BQ623792 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 50/123 (40.65%), Postives = 62/123 (50.41%), Query Frame = 2
Query:   35 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 397
            MA ++A+  TS +  +VL             LGLP    +   +VRC+     SK+ +                         LVD+RMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of BQ623792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL3.161e-2753.23Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH1.286e-2051.22Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ8.928e-1440.65Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00883 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00883 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623792 ID=BQ623792; Name=BQ623792; organism=Citrus sinensis; type=EST; length=560bp
CTTCACTCCATCTCGTCTTCCAACTCCAAGAAAAATGGCCGCCATCACTG
CTAGCGTAGGAACATCATCGATTACACCCTCGGTTCTTGTACACAAGCCA
TCCATTGTAGCTTCATCATCCCCTGTTCTTGGATTGCCAGCAAAGGCAGT
GAAGGGGAAAGTGAGATGTTCGATGGAGGAAAAGCCTTCAAAGCAAGAGA
GCAAAACAAACGTGGGAATGAGTGCGTCACTGCTGGCAGCAGCATGCGCG
GCAACAATGTCAAGCCCAGCCATGGCTCTTGTTGATGATAGAATGAGCAC
TGAAGGAACAGGGCTTCCATTTGGCTTGAGCAACAACCTCCTTGGGTGGA
TTCTGTTGGGTGTTTTTGGTCTCATCTGGGCCCTCTACATTCCTTACGCT
TCCAGTCTTGATGAAGATGAAGAGTCCGGATTGTCCCTCTAACAGTCCGA
AGTCTAAAGCCAAACCCCTTGTTGGTAGAAATGTAAAGAGTTTGGCCTTT
TTCCTTAAATTTGTTTTAGTAAAATCTATCTTTTTGTGTTTCAAAAAAAA
AAAAAAAAAA
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