BQ623800

Overview
NameBQ623800
Unique NameBQ623800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:876..1255. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623800 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:    8 CDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 148
            C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:  201 CELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246
The following BLAST results are available for this feature:
BLAST of BQ623800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TI10B_ARATH1.526e-1168.09Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00891 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00891 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623800 ID=BQ623800; Name=BQ623800; organism=Citrus sinensis; type=EST; length=380bp
AAGACCTTGTGATCTACCAATTGCAAGGAGAAATTCACTCCACAGGTTCT
TGGAGAAGAGAAAAGACAGGATTGTTGCAAGAGCACCGTACCAAGTGAAT
GGCTCAGCAGGGGCTCCAGACAAGCCCGCTGATAGCAAGTCATGGCTTGG
CCTGGCTGCTCAAACTTCACAGTAGTTTGTGCAAATTGCATCCAGTTTTA
GGGACTGATTATTGGCCGGTCATCGTCTTTTTGGCAAACATAAACCTTGC
TTCGTTTTTCTTCATCTTCCATCTTCTTTTAGGTTGGGTTTTGATGAGCC
CACCATAGATCTAACGATCATTCTTCTTACCAATAGTTTATGTAATTAAC
TTCTTTATTGAAAATTTAGTTAATGTTAAT
back to top