BQ623802

Overview
NameBQ623802
Unique NameBQ623802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2179 contig Csv1_Contig2179:420..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623802 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.831e-36
Identity = 73/105 (69.52%), Postives = 79/105 (75.24%), Query Frame = 2
Query:    2 LVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 316
            LVGPFVKAGPLRNT              +VILS+CLT+YG+ASFNEGEPSTAP LTLTGRKK PD LQTADGWAK         ISGVIWAYFLLYVL+LPY+VK
Sbjct:  113 LVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217          
BLAST of BQ623802 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.356e-35
Identity = 74/105 (70.48%), Postives = 78/105 (74.29%), Query Frame = 2
Query:    2 LVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 316
            LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAK         ISGV WAYFLLYVL+LPYFVK
Sbjct:  115 LVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219          
BLAST of BQ623802 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.102e-33
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 2
Query:    2 LVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 316
            LVGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAK         +SGV WA FL+YVL+LPY+ K
Sbjct:  112 LVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216          
BLAST of BQ623802 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.251e-31
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFVK 316
            LVGPF   GPLRNT +            V ILS+CLT+YG+ASFNEGEPSTAP LTLTGRKKE D+LQTA+GW++         +SG +WAYFLLYVL+LPYF K
Sbjct:  105 LVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209          
The following BLAST results are available for this feature:
BLAST of BQ623802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAL_CUCSA8.831e-3669.52Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH3.356e-3570.48Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL4.102e-3365.71Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU2.251e-3160.95Photosystem I reaction center subunit XI, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00893 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00893 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623802 ID=BQ623802; Name=BQ623802; organism=Citrus sinensis; type=EST; length=410bp
CCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAACACAGAAATAG
CAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGTGATCCTCAGC
ATTTGCTTGACAATCTATGGAATTGCTTCATTCAATGAAGGAGAGCCATC
CACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAGCCTGATCAGT
TGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATTCTTCTTTGGT
GGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTATGTCCTTAACCT
TCCTTACTTCGTTAAATAGAAATATGTAACGTCTACTTTTTGGTTTTAAG
ATCCCATGTATCTCAATTTGCTACTCTGTAAATCTACCTGTTTGGGATTT
TTATTGCGTA
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