BQ623806

Overview
NameBQ623806
Unique NameBQ623806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:484..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.003e-48
Identity = 83/94 (88.30%), Postives = 91/94 (96.81%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQG+VVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTG++PWWA
Sbjct:  137 GDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.534e-48
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGEAPWWA
Sbjct:  135 GDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.534e-48
Identity = 83/94 (88.30%), Postives = 92/94 (97.87%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH ++++GKVVFVPWTETDFRTGEAPWW+
Sbjct:  136 GDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.534e-48
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYNNQGRVVRGPAPLSLAL HA++++GKV+FVPW ETDFRTG+ PWWA
Sbjct:  132 GDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.243e-47
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL HA++++GKVVFVPW ETDFRTG+ PWW
Sbjct:  129 GDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.243e-47
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA+I++GKVVFVPW ETDFRTGE PWWA
Sbjct:  135 GDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.585e-46
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I E GKV+FVPW ETDFRTG+APWW+
Sbjct:  135 GDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.324e-45
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYNNQG+VVRGPAPLSLAL+H +I E GKVVFVPW ETDFRTGE PWW+
Sbjct:  136 GDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.153e-44
Identity = 80/96 (83.33%), Postives = 90/96 (93.75%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHAN--IENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN+QGRVVRGPAPLSLALAH +  +E+GKVVFVPW ETDFRTG+APWW+
Sbjct:  135 GDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.665e-43
Identity = 77/95 (81.05%), Postives = 88/95 (92.63%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+ +N KVVF  WTETDFRTGE PWW+
Sbjct:   85 GDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS 179          
The following BLAST results are available for this feature:
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_SOLTU5.003e-4888.30Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC6.534e-4890.43Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_SPIOL6.534e-4888.30Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ8.534e-4887.23Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT3.243e-4786.02Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_TOBAC3.243e-4789.36Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_ARATH3.585e-4687.37Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG2.324e-4584.21Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA1.153e-4483.33Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN1.665e-4381.05Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00897 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00897 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623806 ID=BQ623806; Name=BQ623806; organism=Citrus sinensis; type=EST; length=605bp
GGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCAT
ATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAAT
TCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAA
CCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTC
ATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACA
GATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGGTGC
CTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGTACT
GCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTACAAC
ATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGTAATCTTGGCAATCT
TGACAATTTTCTCTTATCCATTCATTCTTTGTATCTCAAAAATTCATACG
CTCAACAATGTAATGCTACAGCTTCAACGTTGGATATAAGTTTTTATCAT
TTATTAAGTAAAAATTAATTTCTATTATCTCATCAAAAAAAAAAAAAAAA
AAAAA
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