BQ623811

Overview
NameBQ623811
Unique NameBQ623811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:577..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.143e-48
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          

HSP 2 Score: 63.1586 bits (152), Expect = 2.143e-48
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  152 ACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.150e-48
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          

HSP 2 Score: 63.1586 bits (152), Expect = 2.150e-48
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  103 ACQVVLMGAVEGYRIAGGPLGEVTDPIYP 131          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.052e-48
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          

HSP 2 Score: 62.7734 bits (151), Expect = 8.052e-48
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  171 ACQVILMGAVEGYRIAGGPLGEVTDPIYP 199          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.055e-48
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          

HSP 2 Score: 61.6178 bits (148), Expect = 8.055e-48
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRVAGGPLGEVVDPLYP 192          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.055e-48
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          

HSP 2 Score: 62.003 bits (149), Expect = 8.055e-48
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 192          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.055e-48
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          

HSP 2 Score: 63.1586 bits (152), Expect = 8.055e-48
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGA+EGYR+AGGPLGEVTDPLYP
Sbjct:  164 ACQVVLMGAIEGYRVAGGPLGEVTDPLYP 192          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.050e-47
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          

HSP 2 Score: 61.6178 bits (148), Expect = 1.050e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRVAGGPLGEVVDPLYP 192          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.368e-47
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3
Query:   99 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          

HSP 2 Score: 62.003 bits (149), Expect = 1.368e-47
Identity = 25/29 (86.21%), Postives = 29/29 (100.00%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGA+EGYR+AGGPLGEVTDP+YP
Sbjct:  175 ACQVILMGAIEGYRVAGGPLGEVTDPIYP 203          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.368e-47
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          

HSP 2 Score: 61.2326 bits (147), Expect = 1.368e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  163 ACQVVLMGAVEGYRVAGGPLGEVIDPLYP 191          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.368e-47
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          

HSP 2 Score: 61.2326 bits (147), Expect = 1.368e-47
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  162 ACQVILMGAVEGYRVAGGPLGEVVDPLYP 190          
The following BLAST results are available for this feature:
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_CUCSA2.143e-4897.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA2.150e-4897.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2B_PINSY8.052e-4895.89Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP8.055e-4897.26Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC8.055e-4897.26Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC8.055e-4895.89Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC1.050e-4797.26Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2A_PINSY1.368e-4797.22Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_PETSP1.368e-4797.26Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC1.368e-4797.26Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00902 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623811 ID=BQ623811; Name=BQ623811; organism=Citrus sinensis; type=EST; length=425bp
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCTT
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