BQ623813

Overview
NameBQ623813
Unique NameBQ623813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:190..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623813 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.938e-36
Identity = 87/144 (60.42%), Postives = 100/144 (69.44%), Query Frame = 3
Query:    6 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQ 425
            MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQ
Sbjct:    1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQ 141          
BLAST of BQ623813 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.594e-22
Identity = 46/54 (85.19%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  264 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQ 425
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQ
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQ 82          
BLAST of BQ623813 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.636e-21
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 3
Query:  264 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQ 425
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQ
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQ 115          
BLAST of BQ623813 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.814e-12
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3
Query:  261 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLA 419
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELA 106          
The following BLAST results are available for this feature:
BLAST of BQ623813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH8.938e-3660.42Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE9.594e-2285.19Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU1.636e-2187.04Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.814e-1262.26Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00904 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00904 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623813 ID=BQ623813; Name=BQ623813; organism=Citrus sinensis; type=EST; length=427bp
GAGCGATGGCAGCCATGAACTCTAGTGTACTCGCATGCAACTATGCTATT
TCAGGCAGTGCTGGATCATCTGAGCTCAATGCAAAGATTGTTTCGGTTTC
AACCCCGGCTGTGCATGGCCACAAAATGCCTGTGATCAGAGCTCAACAAG
TTGATGTTTCAAAAGAATCAAGAGGAACTGATGGAAGGAGAGCTGCCATG
GCTCTTCTAGCAGTTACCCTTTTCACCACAGCTACTGCTGCTGCTTCTTC
TGCTAATGCTGGGGTCATAGATGAATACCTTGAGAGAAGCAAAGCCAACA
AGGAATTGAATGACCAGAAGAGATTGGCAACAAGTGGTGCAAACTTTGCC
AGAGCATACACTGTTCAATTTGGCACATGCAAGTTCCCTGAGAACTTCAC
AGGCTGCCAAGATCTTGCCAAGCAAAA
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