BQ623815

Overview
NameBQ623815
Unique NameBQ623815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:416..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.518e-83
Identity = 156/172 (90.70%), Postives = 163/172 (94.77%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGF 517
            TITGLAVALKQATT EYKAYQEQV+SNC+KFA+TL++ GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QGTKLKDFVA  QS+ FQSEI+KLRHDVEEYAKQFPTIGF
Sbjct:  337 TITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGF 508          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 9.207e-81
Identity = 151/172 (87.79%), Postives = 161/172 (93.60%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGF 517
            TITGLAVALKQATT EYKAYQEQV+SN +KFA+TL++ GYELVSGGTENHLVLVNLKNKGIDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +GTKLKDFV   +S+  QSEI+KLRHDVEEYAKQFPTIGF
Sbjct:  337 TITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGF 508          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.202e-80
Identity = 154/173 (89.02%), Postives = 163/173 (94.22%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQ-SANFQSEIAKLRHDVEEYAKQFPTIGF 517
            TITGLAVALKQATTPEY+AYQEQVLSN SKFAQ L E GYELVSGGT+NHLVLVN+KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQGTKLKDFVAT + SA  +SEIAKLRHDVEEYAKQFPTIGF
Sbjct:  337 TITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGF 509          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 2.772e-77
Identity = 147/173 (84.97%), Postives = 161/173 (93.06%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSEIAKLRHDVEEYAKQFPTIGF 517
            TITGLAVALKQATT EYKAYQEQVLSN +KFAQTL+E GYELVSGGT+NHLVLVNLK KGIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QGTKLKDFV+  +S++  QSEIAKLRH+VEE+AKQFPTIGF
Sbjct:  336 TITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGF 508          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 4.728e-77
Identity = 145/173 (83.82%), Postives = 161/173 (93.06%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANF-QSEIAKLRHDVEEYAKQFPTIGF 517
            TITGLAVALKQATTPEY+AYQEQVLSN SKFA+ L E GY+LVSGGTENHLVLVNLKNKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++GTKLKDFV   Q++++ QSEI+KL+HDVEE+AKQFPTIGF
Sbjct:  337 TITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGF 509          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.798e-45
Identity = 93/172 (54.07%), Postives = 121/172 (70.35%), Query Frame = 2
Query:    5 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGF 517
            I  +AVALKQA TP ++ Y  Q+L N    A  LLE GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T  TKL+DF +   +      ++A LR  VE++A+ FP  GF
Sbjct:  332 IAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.063e-44
Identity = 88/171 (51.46%), Postives = 122/171 (71.35%), Query Frame = 2
Query:    5 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 514
            I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q+ +  LR +VE +A  FP  G
Sbjct:  309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.814e-44
Identity = 96/185 (51.89%), Postives = 125/185 (67.57%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE------MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIK-----------SETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 505
            TI  LAVALKQA TPE++AYQ QVL+N +  A  L E      +GY +VSGGT+NHLVL++LK +GIDGSRVE+VLE V +AANKNTVPGD SA+ PGG+R+GTPA+T+RGF EEDFA+VA   D AV +AV+I            +E    ++K F+    +     EI +LR +VE +   +P
Sbjct:  336 TIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYP 520          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.093e-44
Identity = 91/177 (51.41%), Postives = 122/177 (68.93%), Query Frame = 2
Query:    2 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQG------TKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 514
            TI+ LAVALKQA TPE+  YQ+QV+SN   F   LL+ G+ELVSGGT+NHL+L+NL N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF KVA + D AVKL++ +KS+         +KL  F    Q  +    + KL  +V  +   FP  G
Sbjct:  310 TISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSF---KQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.093e-44
Identity = 88/171 (51.46%), Postives = 120/171 (70.18%), Query Frame = 2
Query:    5 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 514
            I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q  +  LR  VE +A  FP  G
Sbjct:  309 IAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
The following BLAST results are available for this feature:
BLAST of BQ623815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR1.518e-8390.70Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR9.207e-8187.79Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU1.202e-8089.02Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH2.772e-7784.97Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA4.728e-7783.82Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN2.798e-4554.07Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN1.063e-4451.46Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_NEUCR1.814e-4451.89Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_CANGA3.093e-4451.41Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB3.093e-4451.46Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00906 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00906 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623815 ID=BQ623815; Name=BQ623815; organism=Citrus sinensis; type=EST; length=518bp
CACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGT
ATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCAAAATTTGCACAG
ACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCA
TCTAGTGTTGGTGAATTTGAAAAACAAGGGAATTGATGGTTCCAGAGTTG
AAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCT
GGGGATGTGTCGGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGC
TCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATT
TCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAA
GGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCA
ATCCGAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCAAT
TCCCCACAATTGGGTTTG
back to top