BQ623821

Overview
NameBQ623821
Unique NameBQ623821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623821_ssr195 microsatellite BQ623821_ssr195:195..209. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6506 contig Csv1_Contig6506:2..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623821 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.424e-21
Identity = 47/56 (83.93%), Postives = 54/56 (96.43%), Query Frame = 3 
Query:    3 ELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIMVSS 170
            ELYFGLL+FVGY+VVDTQ+IIEKAH GD+DYVKH+LTLFTDFVAVFVRILIIM+ +
Sbjct:  179 ELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKN 234
[Close]
BLAST of BQ623821 vs. ExPASy Swiss-Prot
Match: BI1_ORYSJ (Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-19
Identity = 41/56 (73.21%), Postives = 52/56 (92.86%), Query Frame = 3 
Query:    3 ELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIMVSS 170
            E+YFGLL+F+GY+V DTQ+IIE+AH GD+DY+KHALTLFTDFVAV VRIL+IM+ +
Sbjct:  180 EVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIMLKN 235
The following BLAST results are available for this feature:
BLAST of BQ623821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BI1_ARATH2.424e-2183.93Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
BI1_ORYSJ5.055e-1973.21Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01000 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01000 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623821 ID=BQ623821; Name=BQ623821; organism=Citrus sinensis; type=EST; length=444bp
TTGAGTTATACTTTGGGCTGTTGGTGTTTGTTGGCTACATCGTGGTGGAT
ACCCAGGATATAATTGAGAAAGCTCACTTTGGAGACTTGGATTATGTCAA
GCATGCCCTGACTCTTTTCACTGACTTTGTTGCTGTCTTTGTTCGTATTC
TCATAATCATGGTGAGCAGTTGAAGCATGCATCTGAGAAAGAGGAGAAGA
AGAAGAAGAGGAGAGACTGAATCTCTCGGTAGCTGGACGGACAGTGCTTG
TTTAAGTAAGGGTTGCAGAACAACTAAATTTGTTGTGTATATTCTTGTGC
TTACTTCTCTTCTCCAAGCTGCACCTCTCTTAACAATCAGATGTAATACA
TGGGGTTAGTTGTGTTCGCTAATTTTTGCTATTTTGCTGCTTGACAATGG
CCGGTGGGTTCTGAAACGACATTTTAATAAAATTCACTGTTTGC
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