BQ623832 | Citrus Genome Database

Overview


Name	BQ623832
Unique Name	BQ623832
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	580

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2225	contig	Csv1_Contig2225:39..616.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 5.086e-70
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 36.5798 bits (83), Expect = 5.086e-70
Identity = 15/19 (78.95%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAHMYK+D+A+YEST
Sbjct:  119 LVPEIAHMYKTDRAKYEST 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 8.650e-70
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 35.4242 bits (80), Expect = 8.650e-70
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAHMYK+DK +YEST
Sbjct:  119 LVPEIAHMYKTDKNKYEST 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.128e-69
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS+SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 35.4242 bits (80), Expect = 1.128e-69
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAHMYK+DK +YEST
Sbjct:  119 LVPEIAHMYKTDKNKYEST 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.502e-69
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 35.4242 bits (80), Expect = 2.502e-69
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAHMYK+D+A+YE+T
Sbjct:  119 LVPEIAHMYKTDRAKYETT 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 5.549e-69
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 35.4242 bits (80), Expect = 5.549e-69
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAHMYK+D+A+YE+T
Sbjct:  119 LVPEIAHMYKTDRAKYEAT 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 8.610e-67
Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGP +SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 35.4242 bits (80), Expect = 8.610e-67
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAHMYK+D+++YEST
Sbjct:  119 LVPEIAHMYKTDRSKYEST 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.032e-64
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MASKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP+DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 33.4982 bits (75), Expect = 5.032e-64
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAH+YK+D+ +YEST
Sbjct:  119 LVPEIAHIYKTDRVKYEST 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.206e-63
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP++SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 31.5722 bits (70), Expect = 4.206e-63
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYES 577
            L PEIAH+YK+DK +YE+
Sbjct:  119 LVPEIAHIYKTDKTKYEA 136

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.573e-59
Identity = 98/118 (83.05%), Postives = 108/118 (91.53%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGPSDSPYAGGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDP
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDP 118

HSP 2 Score: 33.4982 bits (75), Expect = 1.573e-59
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAH+YK+ +AQYEST
Sbjct:  119 LVPEIAHVYKTARAQYEST 137

[Close]

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.233e-58
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = 3

Query:  168 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 521
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY+GGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+P
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEP 118

HSP 2 Score: 33.8834 bits (76), Expect = 2.233e-58
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  524 LYPEIAHMYKSDKAQYEST 580
            L PEIAH+YK+D+A+YE+T
Sbjct:  119 LVPEIAHVYKTDRARYEAT 137

The following BLAST results are available for this feature:

BLAST of BQ623832 vs. ExPASy Swiss-Prot

BLAST of BQ623832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266


Match Name	E-value	Identity	Description
UBC28_ARATH	5.086e-70	98.31	Ubiquitin carrier protein E2 28 OS=Arabidopsis tha...	[more]
UBC9_ARATH	8.650e-70	99.15	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia...	[more]
UBC10_ARATH	1.128e-69	99.15	Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ...	[more]
UBC4_SOLLC	2.502e-69	98.31	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ...	[more]
UBC8_ARATH	5.549e-69	97.46	Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t...	[more]
UBC11_ARATH	8.610e-67	93.22	Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ...	[more]
UBC30_ARATH	5.032e-64	89.83	Ubiquitin carrier protein E2 30 OS=Arabidopsis tha...	[more]
UBC29_ARATH	4.206e-63	88.14	Ubiquitin carrier protein E2 29 OS=Arabidopsis tha...	[more]
UBC1_MAGGR	1.573e-59	83.05	Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor...	[more]
UBC1_COLGL	2.233e-58	80.51	Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00912 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00912 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623832 ID=BQ623832; Name=BQ623832; organism=Citrus sinensis; type=EST; length=580bp
GCAAGGGGTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATC
TGCTTCACCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTC
TGCCGCGCAAGTTTCGCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAA
TAATCCCCTGAAGAGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAG
GATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGA
AGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAGCCCAT
ATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATTATCCT
TTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACAT
CAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAGTC
CAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACT
GATCCAAATCCTGACGACCCCTCTTGTACCCGGAGATTGCCCACATGTAC
AAGTCCGACAAGGCCCAATATGAATCCACG