BQ623835

Overview
NameBQ623835
Unique NameBQ623835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623835_ssr13 microsatellite BQ623835_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:136..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.415e-81
Identity = 148/199 (74.37%), Postives = 165/199 (82.91%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            L+  ++F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV++G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+TGT+MRRKMWLQNM                   SVCHG
Sbjct:   18 LVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHG 216          

HSP 2 Score: 22.3274 bits (46), Expect = 1.415e-81
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:   54 MSQKSLIYAFVA 89
            M+Q+SLIY+FVA
Sbjct:    1 MAQQSLIYSFVA 12          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 4.475e-80
Identity = 146/199 (73.37%), Postives = 162/199 (81.41%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            L+  ++F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GT+MRRKMW QNM                   S+C G
Sbjct:   18 LVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGG 216          

HSP 2 Score: 22.3274 bits (46), Expect = 4.475e-80
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:   54 MSQKSLIYAFVA 89
            M+Q+SLIY+FVA
Sbjct:    1 MAQQSLIYSFVA 12          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.737e-80
Identity = 144/199 (72.36%), Postives = 159/199 (79.90%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            L   +EF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL DNG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG KLKE MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTKM+RK+W +NM                   SVCHG
Sbjct:   18 LAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHG 216          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 7.397e-79
Identity = 144/199 (72.36%), Postives = 160/199 (80.40%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            L+  +EF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG KLKE MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTK+RRKMW +NM                   SVC G
Sbjct:   83 LVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGG 281          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.146e-64
Identity = 120/202 (59.41%), Postives = 147/202 (72.77%), Query Frame = 2
Query:  101 LCLLSTSEFSGNFNSIAYQCLQKLPASNN-KFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            + L   +EF+GNF SIA QCLQKLP+S+N KFTYNCD HTFN+LV++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFGP +KE M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENL  QAQ+++  GT++RRK+W QNM                   SVCHG
Sbjct:   16 MILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHG 217          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.511e-58
Identity = 116/199 (58.29%), Postives = 137/199 (68.84%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            L+  ++F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG  LKE MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +   Q Q F    T+M+RK W QNM                   SVC G
Sbjct:   18 LVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGG 212          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.045e-57
Identity = 108/194 (55.67%), Postives = 141/194 (72.68%), Query Frame = 2
Query:  107 LLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-------------------KAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            L   + +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVDNG+ + VVADES+GR +P  FLERVK++F  +Y                          + A  L++EFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL  QA  F+  G ++RRKMWLQ++
Sbjct:   18 LAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSL 211          

HSP 2 Score: 23.483 bits (49), Expect = 1.045e-57
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:   54 MSQKSLIYAFVA 89
            MSQK LIY+FVA
Sbjct:    1 MSQKGLIYSFVA 12          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 74/200 (37.00%), Postives = 112/200 (56.00%), Query Frame = 2
Query:  119 SEFSG---NFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 703
            SEFS    N +SI+ Q L+KLP   S++  +Y+ D + F+    +G T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN+      FR    + R  MW +N+                    VCHG
Sbjct:   16 SEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 72/201 (35.82%), Postives = 111/201 (55.22%), Query Frame = 2
Query:  119 SEF---SGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGST 709
            SEF   S N ++IA Q L+K+P  N+   +Y+ D + F+    +G T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N+      FR    + R  +W +N                     +CHG T
Sbjct:   16 SEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHGPT 214          
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 68/192 (35.42%), Postives = 114/192 (59.38%), Query Frame = 2
Query:   59 PEIADLRLRGRAEMLCLLSTSEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 631
            P I  L  RG + +    ST+   GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F   L+ LM +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T+ L+QQ+  F+    +++  MW +N+
Sbjct:    2 PIIYSLVARGSSVLAEFTSTN---GNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNV 188          
The following BLAST results are available for this feature:
BLAST of BQ623835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA721_ARATH1.415e-8174.37Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH4.475e-8073.37Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH8.737e-8072.36Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH7.397e-7972.36Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH5.146e-6459.41Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH5.511e-5858.29Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH1.045e-5755.67Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA713_ARATH2.668e-2837.00Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH1.729e-2735.82Vesicle-associated membrane protein 711 OS=Arabido... [more]
VAM7B_DICDI1.912e-2635.42Vesicle-associated membrane protein 7B OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00915 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00915 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623835 ID=BQ623835; Name=BQ623835; organism=Citrus sinensis; type=EST; length=712bp
AAACAAGCCCAGATCTCATCTCATCTCAACTCGACTCAATTAGTCTCATC
AAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGCCGCGCGGAAATG
TTGTGCTTGCTGAGTACATCTGAGTTCAGTGGCAATTTCAACTCCATAGC
CTATCAGTGCCTCCAGAAACTCCCTGCTTCCAACAACAAGTTCACTTACA
ACTGTGATGCTCACACCTTCAATTATCTCGTCGATAATGGTTACACATAT
TGTGTGGTCGCAGATGAATCGTCCGGAAGACAAATACCGATGGCTTTTCT
GGAGCGCGTCAAGGATGAATTTGTTTCCAAATATGGGGGTGGAAAGGCTG
CCACGGCTCCTGCCAATGGCCTGAACAAGGAATTTGGACCAAAATTGAAA
GAACTTATGCAGTACTGTGTTGATCATCCTGAGGAGATCAGCAAGCTTGC
GAAGGTTAAGGCTCAGGTTTCAGAAGTCAAAGGTGTTATGATGGAGAATA
TTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGAGCTACTGGTCGATAAG
ACTGAGAACCTTCATCAGCAGGCACAAGACTTTCGGAGTACGGGGACCAA
AATGCGGAGGAAAATGTGGCTGCAAAATATGAAGATCAAGCTGATTGTTT
TGGGAATACTGATTGCCTTGATCCTCATCATAGTCCTCTCTGTTTGCCAT
GGTTCAACTGCG
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