BQ623836

Overview
NameBQ623836
Unique NameBQ623836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2295 contig Csv1_Contig2295:20..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 95/128 (74.22%), Postives = 104/128 (81.25%), Query Frame = 2
Query:   71 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 445
            KPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.853e-46
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 2
Query:   71 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 445
            KPAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT           V+NTSALAQ
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.048e-45
Identity = 93/129 (72.09%), Postives = 103/129 (79.84%), Query Frame = 2
Query:   71 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 445
            KPA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.045e-44
Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = 2
Query:   83 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 445
            FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.270e-43
Identity = 86/124 (69.35%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   83 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 445
            FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT           VYNTSALAQ
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.680e-39
Identity = 83/129 (64.34%), Postives = 97/129 (75.19%), Query Frame = 2
Query:   71 KPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 445
            KP+ F V+ KSA +GLPSL+++S  F + A G  KIK DKP G+ GGM LR+G+D+SGRK  GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT           VYNTSALAQ
Sbjct:   12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.430e-32
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   89 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 442
            +++S   G+   A+ S  IVAK  K ++T +PYG  GG+  +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT           VY+TSALA
Sbjct:   19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of BQ623836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH8.316e-4774.22Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC1.853e-4671.09Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM2.048e-4572.09Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU5.045e-4470.16Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC3.270e-4369.35Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL1.680e-3964.34Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU4.430e-3257.98Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00916 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00916 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623836 ID=BQ623836; Name=BQ623836; organism=Citrus sinensis; type=EST; length=569bp
AACGAAAACAAAACAGGAGAGCACAGCAAAGCAAATGGCAGCCTCAGTGA
TGGCTTCTTCGTTGAGCCTGAAACCAGCTCCTTTCACTGTGGAGAAATCA
GCAGCGAGAGGCCTTCCCTCTCTTGCTAAAACTTCATTCAAAATTGTGGC
TAAAGGCGGCAAGATCAAAACCGACAAACCCTATGGAGTAAATGGTGGTA
TGGATTTGAGGGAAGGTCTGGATGCATCCGGCAGGAAGGCTAAGGGGAAA
GGTGTTTACCAATTTGTTGACAAGTACGGTGCCAATGTTGATGGATACAG
TCCTATCTACAATGAGAACGACTGGTCTCCCAGTGGTGATGTCTATACTG
GTGGTGCAACTGGCTTGGCAATCTGGGCTGTTACTCTTGCCGGTCTTCTT
GCAGGAGGAGCACTTCTCGTCTACAACACAAGTGCTTTGGCACAGTAGAT
GAATTTCAATCAATGTTACATTATTATCTCTATTTTGTATAACTTGTCAA
TGTTGCTGTTAAATGTACCTTCCACAGCTACTTCGTGTATCTATTTTGTG
TAATGTTTTGGGTGGATTT
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