BQ623839

Overview
NameBQ623839
Unique NameBQ623839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6053 contig Csv1_Contig6053:371..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 5.972e-89
Identity = 157/199 (78.89%), Postives = 176/199 (88.44%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNS 598
            DQVK+SLTDRI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYALSEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+QAQEVH A+R WLK NVS +VA+KTRIIYGGSVNG N AELA +  +  F VGGASLK        NS
Sbjct:  109 DQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNS 307          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.269e-88
Identity = 156/199 (78.39%), Postives = 178/199 (89.45%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNS 598
            DQVK+SLTDRIEI+ QNSWV KGGAFTGEISVEQLKDIG KWV+LGHSERRHVIGEDDQFIGKKAAYAL+EGLGVIACIGE+L+EREAGKTFDVC++QLKA+ADA+PSW+N+V+AYEPVWAIGTGKVA+P+QAQEVH A+R+WLK NVSA+VA+KTRIIYGGSVNG N AELA +  +  F VGGASLK        N+
Sbjct:  108 DQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNA 306          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 3.871e-88
Identity = 153/199 (76.88%), Postives = 177/199 (88.94%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNS 598
            DQVK+SLT R+EI+AQN W+GKGGAFTGEISVEQLKD+GC+WV+LGHSERRHVIGE ++FIGKKAAYAL++G+GVIACIGE L+EREAGKTFDVC+QQLKA+ADA+PSWDNVV+AYEPVWAIGTGKVA+P+QAQEVH A+RDWLK NVS +VA+KTRIIYGGSVNG NCAELA +  +  F VGGASLK        NS
Sbjct:  116 DQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 314          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.054e-85
Identity = 153/199 (76.88%), Postives = 172/199 (86.43%), Query Frame = 2
Query:    2 DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNS 598
            DQVK+SLTDRIE++AQN+W+GKGGAFTGEIS EQL DIGC+WV+LGHSERRHVIGEDD+FIGKKAAYALS+ L V+ACIGE L+EREAGKTFDVCF+Q+KA+AD I  W NVVIAYEPVWAIGTGKVA+PEQAQEVHAA+RDWLK NVSADVA+  RIIYGGSVN +NCAELA K  +  F VGGASLK        NS
Sbjct:   92 DQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNS 290          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.059e-69
Identity = 130/194 (67.01%), Postives = 153/194 (78.87%), Query Frame = 2
Query:   20 LTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD-AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQSLLPFGNS 598
            L   I++AAQN WV KGGAFTGE+S + L ++G  WV+LGHSERR ++GE ++F+GKKAAYA SEGLGVIACIGE L+EREAGKTFDVCF+QLK++A      WDNVV+AYEPVWAIGTGKVA+PEQAQEVH A+RDWLK NVS +VA+KTRIIYGGSVNG N   LA +  +  F VGGASLK        NS
Sbjct:   56 LKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINS 249          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 4.604e-65
Identity = 120/189 (63.49%), Postives = 143/189 (75.66%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VK+ L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++REAG T DV   Q KA A+ I  W NVV+AYEPVWAIGTGKVATP QAQEVHA+LRDWLK N S +VA  TRIIYGGSV  +NC ELA +  +  F VGGASLK +
Sbjct:   52 VKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 7.854e-65
Identity = 119/189 (62.96%), Postives = 146/189 (77.25%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VK+ L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA AD I  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LRDWLK NVS +VA  TRIIYGGSV G++C ELA +  +  F VGGASLK +
Sbjct:   52 VKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 2.285e-64
Identity = 119/189 (62.96%), Postives = 144/189 (76.19%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VK  L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA A  I  W N V+AYEPVWAIGTGKVATP QAQEVHA LRDWLK NVS +VA  TRIIYGGSV G++C ELA +  +  F VGGASLK +
Sbjct:   52 VKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 2.984e-64
Identity = 119/189 (62.96%), Postives = 144/189 (76.19%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VK+ L   I++AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++RE+G T DV   Q KA ++ I  W NVV+AYEPVWAIGTGKVATP+QAQEVH  LR WL  NVSA+VA  TRIIYGGSV G+NC ELA K  +  F VGGASLK +
Sbjct:   52 VKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPE 240          
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.898e-64
Identity = 119/189 (62.96%), Postives = 141/189 (74.60%), Query Frame = 2
Query:    8 VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELANKRILMVFWVGGASLKAQ 574
            VKN L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L+ERE+G T DV   Q KA AD +  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LR WL  NVS +VA  TRIIYGGSVNG+NC EL  +  +  F VGGASLK +
Sbjct:   52 VKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPE 240          
The following BLAST results are available for this feature:
BLAST of BQ623839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_ARATH5.972e-8978.89Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN2.269e-8878.39Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_SPIOL3.871e-8876.88Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_SECCE1.054e-8576.88Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP1.059e-6967.01Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_MAIZE4.604e-6563.49Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_SECCE7.854e-6562.96Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU2.285e-6462.96Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_ORYSJ2.984e-6462.96Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_PETHY3.898e-6462.96Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00919 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00919 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623839 ID=BQ623839; Name=BQ623839; organism=Citrus sinensis; type=EST; length=612bp
TGATCAAGTGAAGAATTCATTAACAGATAGAATTGAGATAGCAGCTCAGA
ACTCTTGGGTCGGAAAAGGTGGAGCATTTACAGGAGAAATCAGTGTGGAA
CAACTGAAAGATATTGGCTGCAAGTGGGTTGTTCTGGGGCATTCTGAGCG
CAGACATGTTATTGGTGAAGATGATCAGTTTATAGGGAAGAAAGCTGCCT
ATGCCTTGAGCGAGGGACTTGGTGTAATAGCTTGTATCGGGGAACAGTTG
CAAGAGAGAGAAGCAGGAAAAACTTTTGATGTCTGTTTTCAGCAACTTAA
AGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATATG
AGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGGCT
CAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCAGC
AGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGGAA
GCAATTGTGCTGAACTTGCAAACAAGAGGATATTGATGGTTTTCTGGGTT
GGTGGCGCTTCCTTGAAGGCCCAGAGTTTGCTACCATTTGGCAATTCCCG
TAACATCCAAGA
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