BQ623842

Overview
NameBQ623842
Unique NameBQ623842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623842_ssr274 microsatellite BQ623842_ssr274:274..291. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623842 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.989e-31
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 3
Query:   90 KLLISIRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFND-TKWETEMDAFGLEKYPSVEIDWEAI 530
            K    +RG+FARLNFP+L+H+G+H+ G+FG+YKPLH+SVDAKL+AIC+++A                 +   K V  P  +  +K E  S +   SP           SSP SD++F D  +  +W    + F LEKYPS EIDW++I
Sbjct:  193 KAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQK-----QDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWN---ETFSLEKYPSYEIDWDSI 332          

HSP 2 Score: 44.2838 bits (103), Expect = 1.989e-31
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:    2 VAEIRLPKNRTRLWLGTFDT 61
            VAEIRLP+NRTRLWLGTFDT
Sbjct:  164 VAEIRLPRNRTRLWLGTFDT 183          
BLAST of BQ623842 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.531e-24
Identity = 57/151 (37.75%), Postives = 79/151 (52.32%), Query Frame = 3
Query:   90 KLLISIRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLS 542
            K    +RG+FARLNFP L+H+         +Y+PL +SVDAKL+AICQNLA                  + T  V LP        E   +++ SSP    S    GSSSP S+++F D  + + +   +   LEKYPS EIDW++I + S
Sbjct:  124 KAAYKLRGDFARLNFPDLRHND--------EYQPLQSSVDAKLEAICQNLAETTQKQVRSTKKSSSRKRSSTVAVKLP--------EEDYSSAGSSPLLTESYGSGGSSSPLSELTFGD-TEEEIQPPWNENALEKYPSYEIDWDSILQCS 257          

HSP 2 Score: 44.2838 bits (103), Expect = 2.531e-24
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 2
Query:    2 VAEIRLPKNRTRLWLGTFDT 61
            VAEIRLP+NRTRLWLGTFDT
Sbjct:   95 VAEIRLPRNRTRLWLGTFDT 114          
BLAST of BQ623842 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 64/154 (41.56%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  105 IRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANI---KVENTSATSLSSPTPDHSLSDAG---SSSPESDVS-FLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLSE 545
            +RGEFARLNFP  +H   +  G    + PLH+SVDAKLQ ICQ+L                    +T+ + LP +   +   K E   +      + ++S SD     SSSPES ++ FLDF+D+ ++ E+ +FGLEK+PSVEIDW+AI KLSE
Sbjct:  139 LRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSVDAKLQEICQSLR-------------------KTEDIDLPCSETELFPPKTEYQESEYGFLRSDENSFSDESHVESSSPESGITTFLDFSDSGFD-EIGSFGLEKFPSVEIDWDAISKLSE 271          
BLAST of BQ623842 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  105 IRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN---NVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHS----LSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEIDWEAIRKLS 542
            +RG+ A+LNFP+L H          D  PL +SVD KLQAIC++L       +V              +T+  L  A     K E+     LS+ +P       L ++ +    SD +FLDF+DT++E E+ +FGL K+PSVEIDW+AI KL+
Sbjct:  117 LRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSDTEFE-EIGSFGLRKFPSVEIDWDAISKLA 259          
The following BLAST results are available for this feature:
BLAST of BQ623842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RAP24_ARATH1.989e-3140.54Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF58_ARATH2.531e-2437.75Ethylene-responsive transcription factor ERF058 OS... [more]
ERF60_ARATH6.733e-2041.56Ethylene-responsive transcription factor ERF060 OS... [more]
ERF56_ARATH5.898e-1637.25Ethylene-responsive transcription factor ERF056 OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00922 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00922 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623842 ID=BQ623842; Name=BQ623842; organism=Citrus sinensis; type=EST; length=659bp
GGTTGCTGAAATAAGACTCCCCAAGAACAGAACCAGGCTTTGGCTTGGCA
CTTTTGATACAGCTGAAGAAGCTGCTTTGGCCTATGACCAAGCTGCTTAT
AAGCATAAGAGGAGAGTTTGCAAGACTCAATTTCCCGCACCTCAAGCATC
ATGGAGCCCATGTCACTGGTGAATTTGGTGATTACAAGCCTCTTCATGCT
TCCGTTGATGCAAAATTGCAAGCCATCTGCCAAAACTTGGCTCTTAACAA
CAACGTGCAGAAACAAACATCCAAGCAGCAGCAGCAGCAGCAGGAGGCTG
AAACAAAACCAGTGTTGTTACCAGCTACTGCTGCTAACATAAAGGTTGAG
AACACATCAGCAACTTCATTATCATCACCAACACCAGATCATTCATTATC
TGATGCTGGCTCATCATCGCCAGAATCTGACGTATCTTTCTTAGACTTCA
ATGACACCAAGTGGGAAACTGAAATGGATGCTTTTGGCTTGGAGAAATAC
CCTTCTGTGGAAATTGATTGGGAAGCTATTAGAAAATTATCTGAGTTTTA
ATTATTTAGTCTTGCTATATTTTCTAGGTCGGGTTGTATTTTCCCTTTTT
TTTTTTTAAGAGAGTCTAAAGAGTGGCATCTGCAATGAAATTTTTGACAT
TTGCAGAGT
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