BQ623844

Overview
NameBQ623844
Unique NameBQ623844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10385 contig Csv1_Contig10385:138..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.578e-36
Identity = 66/113 (58.41%), Postives = 91/113 (80.53%), Query Frame = 3
Query:   90 SRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSVRL 428
            +RV +++S +SW+ ++++A NQ CP+V HFTA WC+PSV MN FFEELA  Y+D LFL VDVDEVK VAS++E+KAMPTF+ +K+G  +DKLVGANP  I+K ++GF+ S R+
Sbjct:    2 ARVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVDGFVQSSRV 114          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  105 VNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSV 422
            + +++SWD  + +A   G  VV +F+A WC P   +  FF EL+  +  ++FL VDVDE+   +S  +IKA PTF  +K G  + KLVGAN   ++K +   I SV
Sbjct:   28 ITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSIIDSV 133          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   78 QLMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHSV 422
            +L    V  + +++ WD  +++A+  G  V+ +F+A WC P   +  ++ EL+  Y  ++FL +DVDE+   ++  EIKA PTF  +++G  VDKLVGAN   + K I   + S+
Sbjct:   20 ELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSL 134          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   87 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 401
            + +V   ++ ++W+  + KA      VVV FTA+WC P   +  FF +LA    ++LFL VD DE+K VAS   I+AMPTF+ +KEG ++DK+VGA    ++  I
Sbjct:    5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.149e-16
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 3
Query:   87 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMINGFIHS 419
            + +V  V++  +W+  + K  +    +VV FTA+WC P   +  F+ ELA     + FL VDVDE+K VA+   ++AMPTF+ +KEG +VDK+VGA    +++ I   I S
Sbjct:    4 EGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISS 114          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.666e-15
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   96 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 401
            V   +++  +D  +TKA   G  V++ FTA+WC P   +   F E A  +   +FL VDVDE+K VA K  ++AMPTF+ +K+GA  DK+VGA    ++  I
Sbjct:    8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.666e-15
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   96 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 401
            V   +++  +D  +TKA   G  V++ FTA+WC P   +   F E A  +   +FL VDVDE+K VA K  ++AMPTF+ +K+GA  DK+VGA    ++  I
Sbjct:    8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 3
Query:   96 VARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGA 374
            V  V+S + W + I +A      VV+ FTA+WC P   M   F +LA  +   +FL VDVDE+K +A +  ++AMPTF+ MKEG + D++VGA
Sbjct:   20 VISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGA 112          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 38/105 (36.19%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   87 KSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 401
            + +V   ++ ++W+  + K  +    +VV FTA+WC P   +  F  ELA    ++ FL VDVDE+K VA +  +++MPTF+ +KEG ++DK+VGA    +++ I
Sbjct:    5 EGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTI 109          
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 3
Query:   81 LMKSRVARVNSEKSWDLFITKATNQGCPVVVHFTAAWCMPSVAMNHFFEELASTYQDILFLSVDVDEVKVVASKMEIKAMPTFILMKEGALVDKLVGANPQAIRKMI 401
            + +  V   +S + W   + +A +    V V FTA WC P   +   F EL+  + +I FL VDVDE++ VA + +++AMPTFI +K+G  VDK+VGA    + + +
Sbjct:    1 MAEGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
The following BLAST results are available for this feature:
BLAST of BQ623844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TRXL4_ARATH3.578e-3658.41Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
TRXH9_ARATH1.082e-1639.62Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC1.414e-1634.78Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH1_ARATH1.846e-1640.95Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC3.149e-1638.74Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_ORYSJ2.666e-1540.20Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI2.666e-1540.20Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_WHEAT7.756e-1543.01Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_RICCO1.323e-1436.19Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH_PICMA1.323e-1436.45Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00924 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00924 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623844 ID=BQ623844; Name=BQ623844; organism=Citrus sinensis; type=EST; length=553bp
AGAATACATAAGAAAATTTAAAAAAAAAAAAAAGAAAGCAGAAGAAAGAA
AAGATGCAAGGCAATGGCAATGAAGCACAGCTAATGAAGTCCAGAGTTGC
CAGAGTAAATTCAGAGAAGTCATGGGATTTATTTATCACCAAAGCTACCA
ACCAAGGCTGCCCTGTTGTGGTGCATTTTACCGCAGCATGGTGCATGCCA
TCAGTGGCTATGAATCATTTCTTTGAAGAACTTGCCTCGACCTATCAAGA
TATTCTATTTCTATCAGTCGATGTGGATGAAGTTAAGGTGGTAGCATCAA
AGATGGAGATAAAGGCCATGCCAACATTTATATTGATGAAGGAAGGAGCT
TTGGTTGATAAGCTTGTGGGTGCCAATCCTCAAGCGATAAGAAAAATGAT
TAATGGTTTTATTCACTCCGTTCGGTTACACAAAAACTAGCTAGTTGAAA
TTTATTAGACATGTATGCTTTTTTTTGTTGGTGTTTCATAAGGTTTGGGG
TGAGAATTGTTTGAAGAAAATTATGGAAGTTTGCAAGAATTGGTAGCTAG
TGA
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