BQ623849

Overview
NameBQ623849
Unique NameBQ623849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:23..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.983e-84
Identity = 148/189 (78.31%), Postives = 162/189 (85.71%), Query Frame = 2
Query:   38 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERH 604
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIGI+VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK T +MKSFKA+DK+R+ER N+RH
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRH 189          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.004e-82
Identity = 148/189 (78.31%), Postives = 158/189 (83.60%), Query Frame = 2
Query:   38 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERH 604
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIGIS+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK T +MKS  AYDK+R+ER N+RH
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRH 189          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.902e-81
Identity = 147/189 (77.78%), Postives = 158/189 (83.60%), Query Frame = 2
Query:   38 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERH 604
            MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIGI+VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK T +MKS KA+DK+R+ER N+RH
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRH 189          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.233e-80
Identity = 145/189 (76.72%), Postives = 158/189 (83.60%), Query Frame = 2
Query:   38 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERH 604
            MKHNNVIP+ HF+KHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK T D+K+FKAYDK+R+ER N RH
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARH 189          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.117e-73
Identity = 137/189 (72.49%), Postives = 150/189 (79.37%), Query Frame = 2
Query:   38 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERH 604
            MKHNNVIPNGHFKK W+NYVKT FNQP                IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK T DMK F AYDK+R+E  N+RH
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRH 189          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.203e-63
Identity = 121/194 (62.37%), Postives = 139/194 (71.65%), Query Frame = 2
Query:   62 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHFWCQVEEGCRGLK 643
            NGHFKKHWQNYVKTWFNQP                I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L K  + MKSF AY KLR+ER NERH   +++      K
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARMKRAAEAEK 198          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 105/188 (55.85%), Postives = 131/188 (69.68%), Query Frame = 2
Query:   38 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANER 601
            ++ N+++PNGHF K WQ +VKTWFNQP                 FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+GI+VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK T DMK    Y KLRIER N R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNAR 189          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 104/187 (55.61%), Postives = 124/187 (66.31%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I N HF K WQ  V+TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIGISVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI            ++D K+FKA+  LR+ RAN R F
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLF 192          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.244e-48
Identity = 98/188 (52.13%), Postives = 126/188 (67.02%), Query Frame = 2
Query:   41 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP-TVDLVKGTQDMKSFKAYDKLRIERANER 601
            K NN+IPN H+ K WQ +VKTWFNQP                +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIGI+VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  V+  + T+D K FKA+  LR  R + R
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDAR 190          
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 3.064e-47
Identity = 98/187 (52.41%), Postives = 120/187 (64.17%), Query Frame = 2
Query:   47 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKGTQDMKSFKAYDKLRIERANERHF 607
            N +I N HF K WQ  V+TWFNQP                I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIGI+VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +          T++ K F A+  LR+ RAN R F
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLF 192          
The following BLAST results are available for this feature:
BLAST of BQ623849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH6.983e-8478.3160S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA5.004e-8278.3160S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA1.902e-8177.7860S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH1.233e-8076.7260S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH1.117e-7372.49Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC5.203e-6362.3760S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW8.895e-5555.8560S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE6.597e-5055.6160S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME1.244e-4852.1360S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_ICTPU3.064e-4752.4160S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00929 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00929 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623849 ID=BQ623849; Name=BQ623849; organism=Citrus sinensis; type=EST; length=678bp
CGGAGATAGTCTTCTGCATTTCGCTCTGTAAACAAAAATGAAGCACAACA
ATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAG
ACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGACGAGTTGCTCGTCA
AAAGAAGGCCGTTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCC
CCGTCGTTCATGGCCAGACTTTGAAATATAACATGAAATTAAGGGCTGGC
AGAGGCTTTACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACT
GGCTCCAACAATTGGCATTTCAGTCGATCATCGACGCAAGAACCGTTCTC
TTGAGGGTCTTCAATCTAATGTTCAGAGGCTGAAGACTTACAAGGCCAAG
TTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCTGC
TCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCA
TTACTCTTGAGAAGCCTACTGTCGACCTTGTTAAGGGTACTCAAGATATG
AAGTCCTTCAAGGCTTATGACAAGCTCCGGATTGAGCGTGCGAACGAGCG
CCATTTTTGGTGCCAGGTTGAAGAAGGCTGCAGAGGCTTGAAAGGAAGAG
AAGAAGTAAACAAAACTTGGTTAAGCAG
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