BQ623850

Overview
NameBQ623850
Unique NameBQ623850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:541..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.198e-53
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 78.5666 bits (192), Expect = 4.198e-53
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  144 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.211e-53
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 78.5666 bits (192), Expect = 4.211e-53
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:   95 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 131
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.579e-52
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 78.1814 bits (191), Expect = 1.579e-52
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  163 AQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYP 199
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.579e-52
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 77.0258 bits (188), Expect = 1.579e-52
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  156 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.579e-52
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 77.411 bits (189), Expect = 1.579e-52
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  156 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.579e-52
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 78.5666 bits (192), Expect = 1.579e-52
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYP
Sbjct:  156 AQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYP 192
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.059e-52
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 77.0258 bits (188), Expect = 2.059e-52
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  156 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.682e-52
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:  123 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 77.411 bits (189), Expect = 2.682e-52
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YP
Sbjct:  167 AQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.684e-52
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 76.6406 bits (187), Expect = 2.684e-52
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  155 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYP 191
[Close]
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.684e-52
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:  120 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 338
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 76.6406 bits (187), Expect = 2.684e-52
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:    2 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYP 112
            AQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  154 AQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYP 190
The following BLAST results are available for this feature:
BLAST of BQ623850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_CUCSA4.198e-5397.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA4.211e-5397.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2B_PINSY1.579e-5295.89Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP1.579e-5297.26Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC1.579e-5297.26Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC1.579e-5295.89Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC2.059e-5297.26Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2A_PINSY2.682e-5297.22Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_PETSP2.684e-5297.26Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC2.684e-5297.26Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00930 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00930 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623850 ID=BQ623850; Name=BQ623850; organism=Citrus sinensis; type=EST; length=419bp
CGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAG
CCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGAC
CCATTGTACCCAGGTGGCAGCTTTTGATCCATTGGGTTTGGCTGATGACC
CGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTG
GCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAA
GGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACA
ATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTT
GATAACATTAGTATCGTGGAAATTGGAATTGAAAGTGATTGGTTATTGAT
GTGACTCTATTTGCCTTGC
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