BQ623851

Overview
NameBQ623851
Unique NameBQ623851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7631 contig Csv1_Contig7631:467..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623851 vs. ExPASy Swiss-Prot
Match: APD1_YEAST (Actin patches distal protein 1 OS=Saccharomyces cerevisiae GN=APD1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   30 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL--------KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGE 305
            ++VF+CSH +RDKRCG+  P L + F++++   GL         + + +   +H+GGHK+A N+ +Y  +    I   W G VTP  VP+I++  I   E
Sbjct:  202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEGVKIAFVNHVGGHKFAANVQIYLRNPNTLI---WLGRVTPTIVPSIVEHLIVPEE 298          
The following BLAST results are available for this feature:
BLAST of BQ623851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APD1_YEAST2.772e-1135.00Actin patches distal protein 1 OS=Saccharomyces ce... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00931 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00931 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623851 ID=BQ623851; Name=BQ623851; organism=Citrus sinensis; type=EST; length=598bp
TTCGGGAGTCCAGGAAGGGTTGACTAGGTTCATATGTCTTCGTATGCTCC
CATGGTAGTCGAGATAAGAGATGTGGTGTTTGTGGCCCAGCTCTTATTGA
AAAATTCAATGCGGAGATTGATTCGCGAGGACTGAAAGATCAGATCTTTG
TTAAGCCATGCTCTCATATCGGGGGCCACAAATATGCTGGTAACTTGATC
GTCTACAGTCCTGATTCAGAAGGGAAAATTATGGGCCACTGGTATGGCTA
TGTCACTCCTGATGATGTGCCTGCAATACTGGATCAGCATATTGCTAAGG
GCGAAATAATTGAAAGACTTTGGAGAGGCCAATTGGGGCAATCTGCTGAA
GTTGAGAAAGTGGATGAAAAGAAGCTTCCAAATGGAAAAGAGGAATCATA
AAGCAAGAAGCTTGAAGATGGCAACACTCAGGTCACAAAGGAAAATGTCA
CTGGTGGCTGTTGCCAGGGTGCCAGTGGCTTTTCATGTTGCAAGGACAGA
AGTTCAGATGCTACTGGAGAAAATAAACAGATAGAAACCAAGGGTCAAGG
CAGATTGTCAAGCTGGCTAGGATCATTTGAGCAAAGGGATGTCCTTAC
back to top