BQ623852

Overview
NameBQ623852
Unique NameBQ623852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:177..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623852 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3
Query:   66 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 230
            D++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   12 DKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of BQ623852 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   66 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 233
            D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   11 DKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of BQ623852 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   66 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 227
            D SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:   12 DSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of BQ623852 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 3
Query:   66 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 227
            D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:   12 DSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of BQ623852 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 3
Query:   66 DRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 230
            D +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:   12 DSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
The following BLAST results are available for this feature:
BLAST of BQ623852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MT3_CARPA7.087e-1663.64Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC3.292e-1357.14Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.383e-1162.96Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV4.024e-1157.41Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO8.965e-1156.36Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00932 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00932 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623852 ID=BQ623852; Name=BQ623852; organism=Citrus sinensis; type=EST; length=495bp
TTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAA
CATGCGACTGCGCCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACAC
ATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTT
AAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTACTACTACTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGGTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGGA
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