BQ623860

Overview
NameBQ623860
Unique NameBQ623860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1880 contig Csv1_Contig1880:849..1501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.869e-64
Identity = 122/180 (67.78%), Postives = 144/180 (80.00%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LLA+AFEHIA  TKGVS  RIVR + ELAK IG++GLVAGQV+D+ SEG  D+G+EHLEFIH HKT                  D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N
Sbjct:  178 LLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.898e-63
Identity = 126/180 (70.00%), Postives = 145/180 (80.56%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LLA+AFEHIAV T  VS ARIVRA+ ELAK IGA+GLVAGQV+DINSEG  ++ +E LEFIH HKT                 TD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIALANYIA+RQN
Sbjct:  191 LLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.129e-59
Identity = 116/184 (63.04%), Postives = 144/184 (78.26%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LL++AFEH+A  T    VSP R+VRA+ ELAK IG +GLVAGQV+DI+SEG    D+G+EHLEFIH HKT                 +D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL  FD +K  PL+ALANYIAYRQN
Sbjct:  188 LLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.803e-57
Identity = 114/183 (62.30%), Postives = 142/183 (77.60%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LL++AFEH+A  T   VSPAR+VRA+ ELAK IG +GLVAGQV+DI+SEG    ++G+EHL+FIH HKT                 +D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL  FD +K  PL+ALANYIA RQN
Sbjct:  184 LLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.168e-56
Identity = 115/180 (63.89%), Postives = 134/180 (74.44%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LLA+AFEHI   T GV+P+RIV A+AELAK IG +GLVAGQV DI   G   + +E LEFIH HKT                 T+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL  FD  KA PLIALA+YIAYR N
Sbjct:  190 LLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.132e-51
Identity = 105/183 (57.38%), Postives = 136/183 (74.32%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSE--GQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LLA AFEH+ V + G V+P R++RA+ ELA+ IG  GLVAGQ+ID+ SE      +G+EHLEFIH HKT                 T+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL  FD  KA PL+ALA+YIA R N
Sbjct:  178 LLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.530e-48
Identity = 103/182 (56.59%), Postives = 128/182 (70.33%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEG--QKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LLA AFEH+      VS  ++VRA+ ELAK IG  GLVAGQ  D++SEG  Q D+G+E LE+IH HKT                 T+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+  +KL +DA++ L  FD +K  PLIAL N+IA R +
Sbjct:  193 LLALAFEHLTEAD--VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.870e-46
Identity = 100/180 (55.56%), Postives = 124/180 (68.89%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 534
            LL+ AFEH+   T  +S  R+V A+ ELA+ IG  GLVAGQ +DI+SEG    ++G+EHLEFIH HKT                 +D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+   +L KDA+Q L  F  EK  PL+AL  +IA R
Sbjct:  197 LLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.035e-41
Identity = 80/176 (45.45%), Postives = 122/176 (69.32%), Query Frame = 1
Query:   25 IAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ----KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            +A  + GV+  R++RA+ E+A+ +G +GLVAGQ  D+  E      +D  + +LE +H HKT                 +D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+  KLTYPK++G++ +++ A +LN++AQ+ L  FD +K VPL++LA+YI  RQN
Sbjct:  161 LASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.257e-34
Identity = 77/180 (42.78%), Postives = 112/180 (62.22%), Query Frame = 1
Query:    1 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 540
            LLAYAFE IA  TK V    IV+ IA++A  +   GLV GQ+ID++SEG+ D  +E L FIH HKT                  + ++ +   +A+ IGL FQ++DD+LD+  + ++LGK+ GKDL   K TYP   G+EES K A+ L ++A++++  FD  KA+PLIA+A++I  R N
Sbjct:  122 LLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of BQ623860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GGPPS_CATRO9.869e-6467.78Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR4.898e-6370.00Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.129e-5963.04Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL1.803e-5762.30Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN1.168e-5663.89Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH1.132e-5157.38Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH1.530e-4856.59Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP2_ARATH1.870e-4655.56Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH4.035e-4145.45Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA1.257e-3442.78Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00940 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00940 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623860 ID=BQ623860; Name=BQ623860; organism=Citrus sinensis; type=EST; length=653bp
CTTTTGGCCTATGCTTTTGAACATATCGCTGTTTGTACAAAAGGGGTTTC
GCCTGCAAGAATTGTCAGAGCTATTGCGGAATTGGCTAAATATATCGGAG
CTGATGGACTTGTCGCCGGCCAAGTTATTGATATCAATTCTGAAGGCCAA
AAAGATTTGGGAATTGAGCATCTTGAATTTATACATGAACACAAAACTGC
AGCTTTATTGGAGGCTGCTGTTGTTCTTGGAGCCATATTGGGCGGCGGAA
CTGACAACGAAGTCGAGAAACTGAGAACTTTTGCTCGCTGTATTGGGCTT
TTGTTTCAAGTAGTTGATGATATCCTCGATCTGACCAAGTCGTCAAAAGA
ATTGGGGAAGACTGCTGGCAAAGATTTGGTGGCCGATAAGTTAACTTATC
CCAAGTTGCTGGGGATCGAAGAATCGAAGAAGTTAGCTGATAAGTTGAAT
AAAGATGCTCAACAGCAATTGTCGGAATTTGATCAGGAAAAGGCCGTGCC
TTTGATTGCTTTGGCTAACTATATTGCTTATAGGCAGAATTGATGTTTTT
AATTGGGTTAATGCCTCCAGGGGAATTGGGTGTCGTTTGATTTGTAATTG
GATATTTAAGCTTACCTAATCTTGAGAGATCAACTGGTGGGCTTTTTTAA
TAT
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