BQ623864 | Citrus Genome Database

Overview


Name	BQ623864
Unique Name	BQ623864
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	399

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7096	contig	Csv1_Contig7096:611..1008.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.166e-41
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  223 MFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 93.5893 bits (231), Expect = 5.166e-41
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct:  179 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 222

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.295e-40
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 265
            MFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  218 MFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261

HSP 2 Score: 90.8929 bits (224), Expect = 3.295e-40
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLA
Sbjct:  174 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLA 217

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.455e-36
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  221 MFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

HSP 2 Score: 82.0333 bits (201), Expect = 3.455e-36
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1

Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct:  178 GGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLA 220

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.948e-36
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  221 MFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 2 Score: 82.0333 bits (201), Expect = 9.948e-36
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1

Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLA
Sbjct:  178 GGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLA 220

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.730e-35
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  221 MFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

HSP 2 Score: 82.8037 bits (203), Expect = 3.730e-35
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1

Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLA
Sbjct:  178 GGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLA 220

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.859e-35
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  219 MFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 78.1814 bits (191), Expect = 4.859e-35
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1

Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLA
Sbjct:  176 GGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLA 218

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.859e-35
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  219 MFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 78.1814 bits (191), Expect = 4.859e-35
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1

Query:    4 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 132
            GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLA
Sbjct:  176 GGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLA 218

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.164e-28
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 265
            MFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  221 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264

HSP 2 Score: 61.6178 bits (148), Expect = 8.164e-28
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1

Query:   13 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLA 132
            +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLA
Sbjct:  181 VGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLA 220

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.052e-27
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 265
            MFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  224 MFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267

HSP 2 Score: 61.2326 bits (147), Expect = 3.052e-27
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1

Query:   13 LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLA 132
            +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLA
Sbjct:  184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 223

[Close]

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.346e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 2

Query:  134 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 268
            MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  221 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 88.9669 bits (219), Expect = 8.131e-18
Identity = 46/89 (51.69%), Postives = 52/89 (58.43%), Query Frame = 1

Query:    1 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAYVLHVWFLRSGHCHRQGTVRELGRPLGRPCQQQCLGLRHQLCPRK 267
            AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLA      F        +G +  L   L  P             P K
Sbjct:  177 AGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of BQ623864 vs. ExPASy Swiss-Prot

BLAST of BQ623864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB27_TOBAC	5.166e-41	95.56	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB21_MAIZE	3.295e-40	97.73	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB23_TOBAC	3.455e-36	91.11	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB26_PETSP	9.948e-36	88.89	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB215_PEA	3.730e-35	84.44	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB23_ORYSJ	4.859e-35	91.11	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	4.859e-35	91.11	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_SOLLC	8.164e-28	86.36	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB23_HORVU	3.052e-27	84.09	Chlorophyll a-b binding protein of LHCII type III,...	[more]
CB29_MAIZE	1.346e-20	100.00	Chlorophyll a-b binding protein M9, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00944 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00944 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623864 ID=BQ623864; Name=BQ623864; organism=Citrus sinensis; type=EST; length=399bp
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCGTATGTTCTCCATGTTTGG
TTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGG
CCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACC
AACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGA
AATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGC
AAAACATGTGAATTATGTAATGTACTGCTACTACCAGTTTGAGGGGATT