BQ623867

Overview
NameBQ623867
Unique NameBQ623867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:711..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.506e-117
Identity = 204/214 (95.33%), Postives = 213/214 (99.53%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAKGA++FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 421.009 bits (1081), Expect = 2.569e-117
Identity = 205/214 (95.79%), Postives = 212/214 (99.07%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 1.665e-116
Identity = 203/214 (94.86%), Postives = 212/214 (99.07%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQIN+ KRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINDAKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 2.175e-116
Identity = 204/214 (95.33%), Postives = 210/214 (98.13%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQI EPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRG VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 3.709e-116
Identity = 202/214 (94.39%), Postives = 210/214 (98.13%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTF P+GLTTEVKSVEMHHESL EALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAKGA+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EILTKIDRRSGKE+EKEPKFLKNGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 3.709e-116
Identity = 203/214 (94.86%), Postives = 210/214 (98.13%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQI+EPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGPSGLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETF  YPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 8.263e-116
Identity = 202/214 (94.39%), Postives = 210/214 (98.13%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLL+ALDQINEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETG +KPGMVVTFGPSGLTTEVKSVEMHHESL EALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE+LTKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR MRQTV
Sbjct:  208 LDWYKGPTLLDALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 412.535 bits (1059), Expect = 9.136e-115
Identity = 200/214 (93.46%), Postives = 210/214 (98.13%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLL+ALDQI+EPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P+GLTTEVKSVEMHHESL EA PGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLDALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 9.136e-115
Identity = 199/214 (92.99%), Postives = 210/214 (98.13%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALD INEPKRP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+LQEALPGDNVGFNVKNV+VKDLKRGYVAS SKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDLINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTV 421
[Close]
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 7.734e-114
Identity = 199/214 (92.99%), Postives = 208/214 (97.20%), Query Frame = 2 
Query:    2 LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTV 643
            LDWYKGPTLLEALDQINEPKRP++KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHESL EALPGDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTV
Sbjct:  208 LDWYKGPTLLEALDQINEPKRPSEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTV 421
The following BLAST results are available for this feature:
BLAST of BQ623867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_SOLLC1.506e-11795.33Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ORYSJ2.569e-11795.79Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC1.665e-11694.86Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MANES2.175e-11695.33Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ARATH3.709e-11694.39Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A2_DAUCA3.709e-11694.86Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_DAUCA8.263e-11694.39Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_SOYBN9.136e-11593.46Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MAIZE9.136e-11592.99Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A2_HORVU7.734e-11492.99Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00947 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00947 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623867 ID=BQ623867; Name=BQ623867; organism=Citrus sinensis; type=EST; length=644bp
CCTTGACTGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCA
ATGAACCCAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGAT
GTCTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAAC
TGGTGTACTCAAGCCCGGTATGGTAGTCACATTCGGTCCGTCTGGATTGA
CTACGGAAGTTAAGTCGGTTGAGATGCACCATGAGTCTCTCCAGGAGGCA
CTTCCTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGA
TCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGG
GGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAG
ATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGC
TGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGG
AGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTT
AAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCC
CCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCG
back to top