BQ623877

Overview
NameBQ623877
Unique NameBQ623877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3285 contig Csv1_Contig3285:54..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 418.698 bits (1075), Expect = 1.469e-116
Identity = 184/230 (80.00%), Postives = 208/230 (90.43%), Query Frame = 2
Query:    5 LTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDSHKKVRDSFDG 694
            ++ ++SV ELLECPVC N+MYPPIHQC NGHTLCS CK RVHNRCPTCR ELG+IRCLALEKVA SLELPCKY + GC+GI+PYYSKLKHESQC FRPY+CPYAGSEC  +GDI +LVAHL+DDHKVDMH G TFNHRYVK NP EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVYMAFLRFMGD+++++NY+YSLEVGG+GRK +W+G PRS+RDSH+KVRDS DG
Sbjct:   34 ISPATSVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDG 263          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.121e-115
Identity = 185/230 (80.43%), Postives = 205/230 (89.13%), Query Frame = 2
Query:    5 LTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDSHKKVRDSFDG 694
            L  ++SV ELLECPVC N+MYPPIHQC NGHTLCS CK RVHNRCPTCR ELG+IRCLALEKVA SLELPCK+ S GC  I+PYYSKLKHE+ C FRPY+CPYAGSEC+V GDIP+LVAHL+DDHKVDMH+G TFNHRYVK NP EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVYMAFLRFMGD+ E++NY+YSLEVGG GRK+ W+G PRS+RDSH+KVRDS DG
Sbjct:   51 LPTTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDG 280          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 1.985e-113
Identity = 182/227 (80.18%), Postives = 201/227 (88.55%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDSHKKVRDSFDG 694
            ++ V ELLECPVC N MYPPIHQC NGHTLCS CK RV N CPTCR+ELGNIRCLALEKVA SLE+PC+YQ+ GC  I+PYYSKLKHE  C FRPY CPYAGSEC+V GDIP LV HLKDDHKVDMH+G TFNHRYVK NPHEVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVYMAFLRFMGD+NE+K +SYSLEVG +GRK++WQG+PRSIRDSH+KVRDS DG
Sbjct:   51 NNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDG 277          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 2.592e-113
Identity = 182/227 (80.18%), Postives = 204/227 (89.87%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDSHKKVRDSFDG 694
            ++SV ELLECPVC  +MYPPIHQC NGHTLCS CK RVHNRCPTCR ELG+IRCLALEKVA SLELPCK+ + GC  I+PYYSKLKHES C FRPY+CPYAGSEC ++GDIP+LVAHL+DDHKVDMH GSTFNHRYVK NP EVENATWMLTVF CFGQYFCLHFEAFQLGM PVYMAFLRFMGD+ ++++YSYSLEVGG+GRK++W+G PRSIRDSH+KVRDS DG
Sbjct:   55 ATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDG 281          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 2.866e-112
Identity = 181/227 (79.74%), Postives = 200/227 (88.11%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDSHKKVRDSFDG 694
            S+ V ELLECPVC N MYPPIHQC NGHTLCS CK RV N CPTCR+ELGNIRCLALEKVA SLE+PC+YQ+ GC  I+PYYSKLKHE  C FR Y+CPYAGSEC+V GDIP LV HLKDDHKVDMH+G TFNHRYVK NPHEVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVYMAFLRFMGD+NE+K +SYSLEVG + RK++WQG+PRSIRDSH+KVRDS DG
Sbjct:   48 SNGVYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDG 274          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH1_DANRE (E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.739e-38
Identity = 84/219 (38.36%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            +S +  L ECPVC + + PPI QC +GH +CS C+P++   CPTCR  LG+IR LA+EKVA S+  PCKY S GC    P+  K +HE  C FRPY+CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   +++N++Y LE+ G+ R+++W+  PRSI +
Sbjct:   32 NSDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLLHQHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 245          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SINA_SCHMA (E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 80/223 (35.87%), Postives = 126/223 (56.50%), Query Frame = 2
Query:    2 NLTVSSSV--RELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            N + SSS+    L ECPVC++   PPI QC +GH +C+ C+ ++ + CPTCR  L NIR LA+EK+A+S+  PCKY + GC   + Y SK +HE+ C +RPY+CP  G+ C  +G++  ++ HL   HK +    G              +  A   + + SCFG  F L  E  +     ++ A ++ +G   ++  + Y LE+ G+ R+++W+  PRSI D
Sbjct:  111 NTSDSSSIDLASLFECPVCMDYALPPIMQCQSGHIVCASCRSKLSS-CPTCRGNLDNIRNLAMEKLASSVLFPCKYSTSGCPETFHYTSKSEHEAACEYRPYDCPCPGASCKWLGELEQVMPHLVHHHKSITTLQGEDI---VFLATDISLPGAVDWVMMQSCFGHSFMLVLEKQERVPDQIFFALVQLIGTRKQADQFVYRLELNGHRRRLTWEACPRSIHD 329          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH1_RAT (E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 83/219 (37.90%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            ++ +  L ECPVC + + PPI QC +GH +CS C+P++   CPTCR  LG+IR LA+EKVA S+  PCKY S GC    P+  K +HE  C FRPY+CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   +++N++Y LE+ G+ R+++W+  PRSI +
Sbjct:   32 NNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 245          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIA1A_MOUSE (E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 83/219 (37.90%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            ++ +  L ECPVC + + PPI QC +GH +CS C+P++   CPTCR  LG+IR LA+EKVA S+  PCKY S GC    P+  K +HE  C FRPY+CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   +++N++Y LE+ G+ R+++W+  PRSI +
Sbjct:   32 NNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 245          
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Match: SIAH1_HUMAN (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 83/219 (37.90%), Postives = 125/219 (57.08%), Query Frame = 2
Query:   14 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYMAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 661
            ++ +  L ECPVC + + PPI QC +GH +CS C+P++   CPTCR  LG+IR LA+EKVA S+  PCKY S GC    P+  K  HE  C FRPY+CP  G+ C   G +  ++ HL   HK +    G          N P  V+   W++ + SCFG +F L  E  +       + A ++ +G   +++N++Y LE+ G+ R+++W+  PRSI +
Sbjct:   32 NNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 245          
The following BLAST results are available for this feature:
BLAST of BQ623877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SINA5_ARATH1.469e-11680.00E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA3_ARATH2.121e-11580.43E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA2_ARATH1.985e-11380.18E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA4_ARATH2.592e-11380.18E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA1_ARATH2.866e-11279.74Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
SIAH1_DANRE2.739e-3838.36E3 ubiquitin-protein ligase Siah1 OS=Danio rerio G... [more]
SINA_SCHMA4.673e-3835.87E3 ubiquitin-protein ligase sina OS=Schistosoma ma... [more]
SIAH1_RAT6.103e-3837.90E3 ubiquitin-protein ligase SIAH1 OS=Rattus norveg... [more]
SIA1A_MOUSE6.103e-3837.90E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus... [more]
SIAH1_HUMAN1.041e-3737.90E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00957 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00957 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623877 ID=BQ623877; Name=BQ623877; organism=Citrus sinensis; type=EST; length=695bp
TAACTTGACTGTCTCTAGCAGTGTTCGTGAACTCTTGGAATGTCCTGTGT
GCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCAAATGGGCACACA
TTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGGTGTCCCACTTGCAG
GCATGAACTTGGTAACATCAGATGTCTTGCTCTGGAGAAGGTGGCTGCAT
CTCTTGAGCTTCCCTGTAAATATCAGAGTTATGGCTGCATGGGCATATAT
CCATATTACAGCAAGCTAAAACACGAATCCCAGTGCATTTTTAGGCCCTA
TAACTGCCCTTACGCTGGATCAGAATGTACAGTAATGGGTGATATTCCTT
ATCTGGTGGCCCATTTGAAAGATGATCATAAAGTTGACATGCACAATGGC
AGTACTTTCAACCATCGTTACGTCAAACAAAATCCACATGAGGTTGAGAA
TGCCACATGGATGTTAACGGTTTTCAGCTGCTTTGGTCAGTACTTCTGCC
TCCATTTTGAAGCCTTCCAGCTTGGTATGGCTCCTGTCTACATGGCATTC
TTGCGCTTTATGGGTGATGATAATGAATCGAAAAACTACAGCTACAGTCT
TGAAGTGGGTGGTAATGGAAGGAAGATGTCATGGCAAGGTGTGCCTAGAA
GCATACGGGACAGCCACAAAAAGGTCCGGGACAGTTTTGATGGAC
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