BQ623878

Overview
NameBQ623878
Unique NameBQ623878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7127 contig Csv1_Contig7127:528..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 9.072e-28
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 2
Query:   89 EKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 271
            EKTPQWRAGP GPKTLCNACGVR+KSGRLVPEYRPANSPTF++ELHSNSHRK+VEMR+Q Q
Sbjct:  202 EKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ 262          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.310e-26
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 2
Query:   83 APEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMM 277
            A EKTPQWR GP+GPKTLCNACGVRFKSGRLVPEYRPA+SPTF    HSNSHRKV+E+RRQK++M
Sbjct:  185 ASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVM 249          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.310e-26
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 2
Query:   83 APEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 274
            A EKTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHRKV+E+RRQK+M
Sbjct:  203 ATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM 266          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GAT14_ARATH (GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.918e-26
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 2
Query:   89 EKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 271
            +KTPQWRAGPMG KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN HRKV+EMRR+K+
Sbjct:  257 QKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GAT13_ARATH (GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   83 APEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQM 274
            A +KTPQWR GPMGPKTLCNACGVR+KSGRLVPEYRPA SPTF    HSNSHRKV+E+RRQK+M
Sbjct:  225 ATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEM 288          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.448e-25
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   83 APEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 271
            A EKTPQWR GP+GPKTLCNACGVR+KSGRLVPEYRPA+SPTF    HSNSHRKV+E+RRQK+
Sbjct:  164 ASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.227e-25
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 2
Query:   89 EKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 271
            +KTPQWRAGP+G KTLCNACGVR+KSGRL+PEYRPA SPTFSSELHSN H KV+EMRR+K+
Sbjct:  229 QKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRKKE 289          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 7.188e-25
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 2
Query:   95 TPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQMMGIELGVLGVK 307
            TPQWR GP+GPKTLCNACGVRFKSGRL PEYRPA+SPTFS+E+HSN HRKV+E+R+ K+ +G E G    K
Sbjct:  190 TPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKE-LGEETGEASTK 259          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GATA6_ARATH (GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 2
Query:   92 KTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQ 265
            KTPQWR GP GPKTLCNACGVRF+SGRLVPEYRPA+SPTF   +HSNSHRK++EMRR+
Sbjct:  229 KTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286          
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Match: GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana GN=At4g36240 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:   89 EKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQK 268
            +KTPQWR GP+G KTLCNACGVRFKSGRL+PEYRPA SPTF++E+HSNSHRKV+E+R  K
Sbjct:  172 QKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231          
The following BLAST results are available for this feature:
BLAST of BQ623878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GATA1_ARATH9.072e-2888.52GATA transcription factor 1 OS=Arabidopsis thalian... [more]
GATA2_ARATH1.310e-2681.54GATA transcription factor 2 OS=Arabidopsis thalian... [more]
GAT11_ARATH1.310e-2682.81GATA transcription factor 11 OS=Arabidopsis thalia... [more]
GAT14_ARATH2.918e-2685.25GATA transcription factor 14 OS=Arabidopsis thalia... [more]
GAT13_ARATH8.491e-2681.25GATA transcription factor 13 OS=Arabidopsis thalia... [more]
GATA4_ARATH1.448e-2580.95GATA transcription factor 4 OS=Arabidopsis thalian... [more]
GATA9_ARATH3.227e-2581.97GATA transcription factor 9 OS=Arabidopsis thalian... [more]
GATA3_ARATH7.188e-2571.83GATA transcription factor 3 OS=Arabidopsis thalian... [more]
GATA6_ARATH7.948e-2481.03GATA transcription factor 6 OS=Arabidopsis thalian... [more]
GAT12_ARATH1.356e-2378.33GATA transcription factor 12 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00958 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00958 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623878 ID=BQ623878; Name=BQ623878; organism=Citrus sinensis; type=EST; length=466bp
TGGGGGAGTGTTCACGGGAGTGTGAAAGCTGCGAAACCGGTTGTTTCGAA
AGTGATTATAGGGAGAAAATGTCAGCATTGTGGCGCCTGAGAAGACCCCG
CAATGGCGGGCTGGGCCAATGGGTCCAAAGACGCTTTGTAATGCTTGTGG
GGTTCGGTTTAAGTCCGGCAGGCTGGTGCCGGAGTACCGGCCGGCAAACA
GCCCGACGTTCTCGAGCGAGTTGCACTCGAACTCGCATAGAAAAGTGGTG
GAGATGAGGAGACAGAAGCAAATGATGGGGATTGAGCTTGGGGTGCTGGG
TGTCAAGCCTGTAGATAAAGGGTAGAGTAGTTTTAGTAGGTCCTTTTTAA
TTTTTTTCCCCCCTTCTTTAGTTTAGCTTATTTAGGATTAGTGGGGTTTC
TTGTAATCAAGTCAGATAGATTTAGTACTTGGTAATTTTGTTTTGGGAAA
AAAAATTTAATTAGAA
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