BQ623886

Overview
NameBQ623886
Unique NameBQ623886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623886_ssr6 microsatellite BQ623886_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:121..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 8.460e-82
Identity = 148/202 (73.27%), Postives = 164/202 (81.19%), Query Frame = 3
Query:   69 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGFGGQASP 674
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNG  F  +  P
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHP 202          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  249 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 647
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR   G
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.506e-25
Identity = 61/135 (45.19%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.506e-25
Identity = 64/135 (47.41%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI  G
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG 179          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.242e-24
Identity = 59/136 (43.38%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  249 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 647
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+  G
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGG 170          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.242e-24
Identity = 63/135 (46.67%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGG 179          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+G  E YR+  G
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGG 192          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 61/135 (45.19%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 182          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180          
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.622e-24
Identity = 61/135 (45.19%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  252 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 647
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 183          
The following BLAST results are available for this feature:
BLAST of BQ623886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB26_ARATH8.460e-8273.27Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE1.732e-2644.85Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY9.506e-2545.19Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_MAIZE9.506e-2547.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO1.242e-2443.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE1.242e-2446.67Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PINSY1.622e-2445.19Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA1.622e-2445.19Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP1.622e-2445.19Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA1.622e-2445.19Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00966 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00966 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623886 ID=BQ623886; Name=BQ623886; organism=Citrus sinensis; type=EST; length=676bp
GAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCG
TCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCT
CAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTT
CTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCT
GCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAA
GTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACA
GATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGT
TACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCA
GGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTT
TCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAA
GCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAA
CTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTG
AGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGGTTT
GGATTTGGAGGACAAGCTTCACCCAG
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