BQ623887

Overview
NameBQ623887
Unique NameBQ623887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623887 vs. ExPASy Swiss-Prot
Match: TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.877e-26
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 3 
Query:   84 LYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFRTV 245
            +YY+YEIDGVG HSLI+VTC+ N+LYAHFVNAP PEWNRD +TL H+ +SF+TV
Sbjct:  173 VYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226

HSP 2 Score: 44.2838 bits (103), Expect = 2.877e-26
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:    2 LSDVDLQDLLASADKVASEEKKDDKGQ 82
            LSDV+LQDL+A ADKV SEE+KD+ GQ
Sbjct:  146 LSDVELQDLIAGADKVVSEERKDETGQ 172
The following BLAST results are available for this feature:
BLAST of BQ623887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL19_ARATH2.877e-2672.22Thylakoid lumenal 19 kDa protein, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00967 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00967 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623887 ID=BQ623887; Name=BQ623887; organism=Citrus sinensis; type=EST; length=399bp
TTTGAGTGATGTGGATTTGCAGGACTTGTTAGCGAGCGCTGATAAGGTGG
CTTCTGAGGAGAAGAAGGATGATAAAGGACAGCCTTTATTATGTGTATGA
GATTGATGGTGTTGGTTCTCATAGCTTGATAAGTGTTACTTGCGCTAACA
ATAAGCTTTATGCACATTTTGTTAATGCACCGACGCCCGAGTGGAATCGA
GACGAAGAGACCTTGAGGCATGTTCATGAATCTTTTAGGACTGTTCAGTA
AGAGTTTGGTGTGGTCATTTAATTGAGTGAAATGAAGTTTATTCGATATG
TTCGTTTATGTGTAATATTCAGTCTTTTTAATCTTCAATTATAAATTTGA
AGAAGACTTTGTTGTTACATTTTTAAAAATTATTATGTTTCTGCTTTTC
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