BQ623890

Overview
NameBQ623890
Unique NameBQ623890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.253e-43
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 3
Query:   81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            F K  G  EYY++TD+EALEAFKR SRLEGIIPALET+HALAYLEKLCPTL+DGT+VV+NFSGRGDKDVQT  KYL V
Sbjct:  393 FFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKYLDV 470          

HSP 2 Score: 69.707 bits (169), Expect = 2.253e-43
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D+DGQIIEPHSISAGLDYPGVGPEHSF KD GRA
Sbjct:  367 DDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRA 400          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.936e-43
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 3
Query:   81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            F K  G  EY++VTD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL DG +VV+NFSGRGDKDVQTAIKYL+V
Sbjct:  398 FLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKYLEV 475          

HSP 2 Score: 71.2478 bits (173), Expect = 2.936e-43
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D+DGQIIEPHSISAGLDYPGVGPEHSFLKD GRA
Sbjct:  372 DDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRA 405          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.930e-41
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 3
Query:   81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            F K  G  EY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTLADG +VVVN SGRGDKDV TA KYL V
Sbjct:  366 FLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLADGVRVVVNCSGRGDKDVHTASKYLDV 443          

HSP 2 Score: 70.4774 bits (171), Expect = 9.930e-41
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRA
Sbjct:  340 DDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRA 373          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.260e-40
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 3
Query:   81 F*KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            F K  G  EY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTL DG +VV+N SGRGDKDV TA KYL V
Sbjct:  312 FLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVLNCSGRGDKDVHTASKYLDV 389          

HSP 2 Score: 70.4774 bits (171), Expect = 8.260e-40
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D+DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRA
Sbjct:  286 DDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRA 319          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.636e-36
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            G  EYY+VTD+EAL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++V+N SGRGDKDVQT  K+L
Sbjct:  340 GRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIVINCSGRGDKDVQTVAKFL 410          

HSP 2 Score: 67.781 bits (164), Expect = 6.636e-36
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRA
Sbjct:  309 DEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRA 342          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.910e-35
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            G  EYY+VTD++AL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++++N SGRGDKDVQT  K+L
Sbjct:  340 GRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIIINCSGRGDKDVQTVAKFL 410          

HSP 2 Score: 67.781 bits (164), Expect = 1.910e-35
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DEDGQ+IE HSISAGLDYPGVGPEHS+LKD GRA
Sbjct:  309 DEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRA 342          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.500e-35
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 3
Query:   87 KMKGVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            K  G  EYY+VTD EA+ A +R S+LEGIIPALETAHA AYLE LCP L +G ++V+N SGRGDKDVQT  KYLQ+
Sbjct:  335 KDAGRAEYYSVTDQEAITALQRLSQLEGIIPALETAHAFAYLETLCPQLKNGERIVINCSGRGDKDVQTVAKYLQM 410          

HSP 2 Score: 63.1586 bits (152), Expect = 5.500e-35
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D++GQ+ E HSISAGLDYPGVGPEHS+LKD GRA
Sbjct:  307 DKEGQVTEAHSISAGLDYPGVGPEHSYLKDAGRA 340          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.085e-32
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   90 MKGVR--EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            +K +R  EYY+VTD +AL+ F++ SRLEGIIPALET+HA+AYLE LCP L    ++V+N SGRGDKDVQT  K L
Sbjct:  333 LKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTVAKVL 407          

HSP 2 Score: 64.3142 bits (155), Expect = 1.085e-32
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            DEDGQ+IE HSISAGLDYPGVGPEHS+LKD  RA
Sbjct:  306 DEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRA 339          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.169e-31
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 308
            G  EY  VTD +AL+A +  S LEGIIPALETAHA A+LE+LCPTLADGT+VV+N SGRGDKDV T  + L
Sbjct:  344 GRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTVAEKL 414          

HSP 2 Score: 60.8474 bits (146), Expect = 1.169e-31
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D DGQ++E HSISAGLDYPGVGPEHS+L++ GRA
Sbjct:  313 DGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRA 346          
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.581e-31
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   96 GVREYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 314
            G  EY +VTD EAL+A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  341 GRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVASSLNI 413          

HSP 2 Score: 63.1586 bits (152), Expect = 2.581e-31
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 DEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRA 103
            D+DGQ+ E HSISAGLDYPGVGPEHS+LKD GRA
Sbjct:  310 DKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRA 343          
The following BLAST results are available for this feature:
BLAST of BQ623890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TRPB1_ARATH2.253e-4379.49Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH2.936e-4379.49Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE9.930e-4178.21Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB1_MAIZE8.260e-4075.64Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB2_ANASP6.636e-3670.42Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_ANAVT1.910e-3567.61Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_SYNY35.500e-3567.11Tryptophan synthase beta chain OS=Synechocystis sp... [more]
TRPB1_ANASP1.085e-3262.67Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_SYNSC1.169e-3167.61Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMP2.581e-3164.38Tryptophan synthase beta chain OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00970 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00970 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623890 ID=BQ623890; Name=BQ623890; organism=Citrus sinensis; type=EST; length=475bp
GGATGAAGATGGGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAG
ATTACCCTGGAGTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGT
GCGTGAGTACTATAATGTCACAGATGATGAAGCATTGGAAGCTTTCAAGA
GGTCATCACGGCTAGAGGGTATAATCCCAGCTTTGGAGACTGCTCATGCA
TTGGCTTATTTGGAGAAGCTATGCCCAACTCTTGCTGATGGTACTAAGGT
TGTGGTTAACTTCAGTGGCAGAGGTGACAAGGATGTCCAGACAGCGATCA
AATATTTGCAAGTTTGATGGTAATGCTTGTAACCCACAATATATGATTCA
TTTACTGAAAACAAATAAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTT
GTATCATTAGTTATTTCAGAGATGTGAGAACCATCTTATGTAATTTGAGT
TAAAACTTTATATATTACATCTATT
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