BQ623894

Overview
NameBQ623894
Unique NameBQ623894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623894_ssr284 microsatellite BQ623894_ssr284:284..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1088 contig Csv1_Contig1088:650..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.056e-36
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            VI+KDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKD V  D LQSKDKKVTA KETKK LEERFKTGKNRWFFTKLRF
Sbjct:   53 VIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.601e-35
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            VIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+L+SKDKKVTA KE K +LEERFKTGKNRWFFTKLRF
Sbjct:   53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.396e-35
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            VIRKDSAKKTAKKSRVK F+KLVNYQHLMPTRYTLDVDLK+V + D+LQSKDKKV A KE K +LEERFKTGKNRWFFTKLRF
Sbjct:   53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.755e-34
Identity = 68/83 (81.93%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            VIRKDSAKKTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VVSAD++ SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Sbjct:   53 VIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.929e-30
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL----KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            VIRKDSAKK  KKSRVKAF+KLVNY H+MPTRYTLD DL    KDVV+AD LQ++DKKVTA + TK RL ERFKTGKNRWFFTKLRF
Sbjct:   53 VIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            V ++ S KK AKKS +K F+K VNY HLMPTRYTLDVD K  V+A++ ++  KKV A KE KK LEE+FKTGKNRWFFTKLRF
Sbjct:   53 VTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKG-VAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            V +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:   53 VTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 VIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            V +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:   53 VTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.694e-18
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 KKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            KK AK+S++KAFVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:   60 KKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.212e-18
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   22 KKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 249
            KK AK+S++KAFVK+ NY HLMPTRY++D+ L K +V+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:   60 KKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
The following BLAST results are available for this feature:
BLAST of BQ623894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA1.056e-3691.5760S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL272_ARATH2.601e-3585.5460S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL273_ARATH3.396e-3585.5460S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL271_ARATH3.755e-3481.9360S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU1.929e-3078.1660S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST3.523e-2466.2760S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27B_YEAST1.532e-1952.3860S ribosomal protein L27-B OS=Saccharomyces cerev... [more]
RL27A_YEAST1.532e-1952.3860S ribosomal protein L27-A OS=Saccharomyces cerev... [more]
RL27_HIPCM1.694e-1857.1460S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_ICTPU2.212e-1855.8460S ribosomal protein L27 OS=Ictalurus punctatus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00974 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00974 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623894 ID=BQ623894; Name=BQ623894; organism=Citrus sinensis; type=EST; length=425bp
GTCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAA
GGCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATGCCCACGCGCTACA
CTCTCGACGTCGATTTGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGC
AAGGACAAGAAGGTGACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGA
GAGGTTTAAGACTGGCAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTT
AGATTTTTAACCAAAGGAAGAAAGCAACTTGTCGTTTTGTTTTGTTTTGT
GTTATTGAAAACGCTTTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTA
GTGTTTTGTGAACTTAATTTTTTCTGGATCTGGTACTATTTTTATGTGAT
ATTATTGGGTTTATAATGTTTACTC
back to top