BQ623897

Overview
NameBQ623897
Unique NameBQ623897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:78..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 2.633e-86
Identity = 160/228 (70.18%), Postives = 179/228 (78.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT ++V+KIV  LNEGQ              ++FL +VKS LR +FHVAAQNCWVKKGGAFTGE+SAEMLVNLG+PWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR W    + S     +T  +          +ELAAQPDVDGF
Sbjct:    4 KFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDW-LKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 3.439e-86
Identity = 164/228 (71.93%), Postives = 182/228 (79.82%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT EEVKKIV+ LNE Q              ++FL LVKS+LR DF VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR ILNES+EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW   K+ S +  + T  +          +EL  Q DVDGF
Sbjct:    4 KFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKW-LAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.660e-86
Identity = 160/228 (70.18%), Postives = 182/228 (79.82%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT EEVKKIV++LNE +              ++FL  VK+ LR DFHVAAQNCWVKKGGAFTGE+SAEMLVNLGIPWVILGHSERR +LNESNEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW   ++   +   +   +         ++ELA QPD+DGF
Sbjct:    4 KFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKW-IKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.307e-85
Identity = 160/228 (70.18%), Postives = 178/228 (78.07%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT EEVKKI++ LN                 ++FL LVK+ LRPDFHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTMDVVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW    + S    ++T  +          +EL  QPDVDGF
Sbjct:    4 KFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKW-LAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 308.531 bits (789), Expect = 2.086e-83
Identity = 156/228 (68.42%), Postives = 177/228 (77.63%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT ++V KIV +LNEGQ              ++FL +VKS LRP+  VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTMDVVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKW    + S     +T  +          +ELAA+PDVDGF
Sbjct:    4 KFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKW-LAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 6.281e-80
Identity = 151/228 (66.23%), Postives = 174/228 (76.32%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT  +V+ IV+ LN GQ              ++FL  VK  LRP+  VAAQNCWVKKGGAFTGE+SAEMLVNLGIPWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR W    + S     +T  +        + +ELAAQPDVDGF
Sbjct:    4 KFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDW-LKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 293.123 bits (749), Expect = 9.070e-79
Identity = 150/228 (65.79%), Postives = 172/228 (75.44%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT E+V+ IV  LN GQ              ++FL +VK+ LRP+  VAAQNCWVKKGGAFTGE+SAEML NLG+PWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR W    + S     +T  +        + +ELAAQ DVDGF
Sbjct:    4 KFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDW-LKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGF 230          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.096e-67
Identity = 128/170 (75.29%), Postives = 143/170 (84.12%), Query Frame = 3
Query:  177 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            VAAQNCWVKKGGAFTGE+SAEML NLG+PWVILGHSERR +LNE+NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TM+VVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW FC + S    ++T  +          +EL  Q DVDGF
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKW-FCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGF 171          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.342e-63
Identity = 130/229 (56.77%), Postives = 149/229 (65.07%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT E V KIV  LNE                ++FL    + L+ +  VAAQNCWVKKGGAFTGE+SA+ML NLGI WVILGHSERR +L ESNEFVG K AYA S+GL VIAC+GE LE+REAG T DV   Q K+ A      W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R W    + S    S T  +         +  LAAQ DVDGF
Sbjct:    4 KFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDW-LKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGF 231          
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62
Identity = 125/228 (54.82%), Postives = 149/228 (65.35%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWAFCKHQS*NCCSNTDHLRRIRKWCKTARELAAQPDVDGF 686
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +LG  WVILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T DV   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R W   K+ S    S T  +           ELA Q D+DGF
Sbjct:   72 KFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPP--FVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDW-LKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGF 296          
The following BLAST results are available for this feature:
BLAST of BQ623897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MAIZE2.633e-8670.18Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH3.439e-8671.93Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_COPJA7.660e-8670.18Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_PETHY1.307e-8570.18Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ORYSJ2.086e-8368.42Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE6.281e-8066.23Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU9.070e-7965.79Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA2.096e-6775.29Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP5.342e-6356.77Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL2.651e-6254.82Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00977 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00977 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623897 ID=BQ623897; Name=BQ623897; organism=Citrus sinensis; type=EST; length=687bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACACCTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGGTATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGGCTTTTTGCAAACACCAGTCCTGAAATTGCT
GCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAAACTGCA
AGGGAATTGGCTGCACAGCCTGATGTTGACGGATTTT
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