BQ623909

Overview
NameBQ623909
Unique NameBQ623909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3951 contig Csv1_Contig3951:315..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.251e-30
Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ
Sbjct:    8 GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQ 150          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.251e-30
Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ
Sbjct:    8 GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQ 150          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.251e-30
Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ
Sbjct:    8 GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQ 150          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.787e-30
Identity = 71/146 (48.63%), Postives = 100/146 (68.49%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D  TG +KGYGFV+F DE EQ
Sbjct:    8 GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQ 150          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.641e-30
Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL+ +MDE +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ
Sbjct:    8 GDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQ 150          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.189e-26
Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLPA 438
            GDL  +MDE ++   F+  GE    VK+I ++ TG   GY F+E    A  +R +Q  NG  +P  N  + F+LN+A++G  ++ +  P+ ++FVGDL ++V DY L + F  ++PS KGAKVV D   G ++GYGFV+F DE+EQ  A
Sbjct:   11 GDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKA 156          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GDL+ WMD T++   +A   E V VKV+R+K +    +  Y F++F S A AER L  +N T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D  L  TFR+ YPS   AK+++D +TG ++ YGFVRF  E EQ
Sbjct:   90 GDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQ 237          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 57/148 (38.51%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLPA 438
            G+L+ W+ E ++   +   G+ V VK+IRN+ TG   GY F+EF S   A   + + N  P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++ +   F +RY S K AK++ D  T  ++GYGFVRF DE++Q  A
Sbjct:   98 GELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSA 244          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.298e-19
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            G+L+ +MDE ++   FA  GE VV +++IR+K TG+  GYGF+E       ER L+  NG P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D ML E F   + S    K+V+D   G +K  GFV F  E EQ
Sbjct:    7 GNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQ 148          
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.625e-15
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  112 GYGFIEFISRAGAERVLQTFNGTPMPNG-------------EQNFRLNWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 429
            GY F+EF ++  A+  L + N TP+PN              ++ FRLNWAS    +     TP+ ++FVGDL+   T+  L   F+ R+ S K  +V+ D LTG ++ +GFVRFGDE E+
Sbjct:  129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247          
The following BLAST results are available for this feature:
BLAST of BQ623909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TSAP1_RAT1.251e-3048.63tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_HUMAN1.251e-3048.63tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN1.251e-3048.63tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_MOUSE2.787e-3048.63tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_PONAB3.641e-3047.95tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE3.189e-2641.61tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO9.279e-2641.89RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO8.685e-2438.51Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE1.298e-1938.36tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NGR1_YEAST9.625e-1538.33Negative growth regulatory protein NGR1 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00989 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623909 ID=BQ623909; Name=BQ623909; organism=Citrus sinensis; type=EST; length=439bp
GGGGACTTGCAGTATTGGATGGATGAGACCTATCTCAACACTTGTTTTGC
ACACACCGGCGAGGTTGTCGCTGTAAAAGTAATTCGTAATAAGCAAACTG
GTCAAATAGAAGGTTATGGATTTATTGAGTTTATTTCGCGTGCTGGTGCT
GAAAGAGTTTTGCAGACATTTAACGGTACCCCTATGCCAAACGGTGAGCA
GAACTTCAGGCTAAACTGGGCATCTTTTGGTGCTGGCGAGAAGCGCGATG
ACACCCCTGACCACACAATATTTGTTGGAGATTTGGCTGCTGACGTTACT
GATTACATGCTTCAAGAGACCTTCAGGGCCCGCTATCCCTCTACTAAAGG
TGCAAAGGTTGTCATTGATAGGCTTACTGGACGCACAAAGGGTTATGGAT
TTGTGAGATTTGGTGATGAAAGTGAACAGCTACCTGCCA
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