C21829

Overview
NameC21829
Unique NameC21829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.098e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.098e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.098e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.937e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.937e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.937e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.304e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.304e-22
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEKTHIN+VVIGHVDSGKSTTTGH IYKLGGI KR I +FEKE+S M KG FKYAW
Sbjct:    1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.304e-22
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HINIVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
[Close]
BLAST of C21829 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.361e-22
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHXIYKLGGIXKRVIXRFEKEASXMNKGXFKYAW 251
            MGKEK HI+IVVIGHVDSGKSTTTGH IYKLGGI KRVI RFEKEA+ MNK  FKYAW
Sbjct:    1 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW 58
The following BLAST results are available for this feature:
BLAST of C21829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
EF1A_WHEAT5.098e-2387.93Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ORYSJ5.098e-2387.93Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE5.098e-2387.93Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA1.937e-2286.21Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_MANES1.937e-2286.21Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A1_DAUCA1.937e-2286.21Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_TOBAC3.304e-2286.21Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_CRYPV3.304e-2282.76Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_ARATH3.304e-2286.21Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOYBN7.361e-2284.48Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21829 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-37R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21829 ID=C21829; Name=C21829; organism=Citrus sinensis; type=EST; length=259bp
GGCACGAGCCGAAGGGCGNCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTNCCTAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTNGATCTACAAGCTTGGTGGTATTNANAAGCGTGTTATCGANAGG
TTCGAGAAGGAAGCTTCTNAGATGAACAAGGGGTNATTCAAATACGCCTG
GNTCTCGAN
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