C21831

Overview
NameC21831
Unique NameC21831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C78AB_ORYSJ (Cytochrome P450 78A11 OS=Oryza sativa subsp. japonica GN=CYP78A11 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.893e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:   12 NQKVQAKLHAELQAV---NSKXTDADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            N  VQA+L AE+ A    +   +D DVAR PYLQAVVKE LR HPPGPLL WAR +T+DV L+NGM++PA TTAMVNMWAITHD +V
Sbjct:  369 NPAVQARLRAEVDAAVGGDGCPSDGDVARMPYLQAVVKETLRAHPPGPLLSWARLATADVGLANGMVVPAGTTAMVNMWAITHDGEV 455          
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.090e-25
Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 3
Query:   21 VQAKLHAELQAV---NSKXTDADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            VQA++ AE+ A        TDADVAR PYLQAVVKE LR HPPGPLL WAR +T+DV L NGM++PA TTAMVNMWAITHD+ V
Sbjct:  367 VQARVRAEVDAAVGAGGCPTDADVARMPYLQAVVKETLRAHPPGPLLSWARLATADVPLCNGMVVPAGTTAMVNMWAITHDAAV 450          
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 3
Query:    9 LNQKVQAKLHAELQAV---NSKXTDADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            L+ + Q K  AEL AV   +    D+D+ + PY+QAVVKEALR+HPPGPLL WAR ST DV + +GM +PA TTAMVNMW+ITHD  +
Sbjct:  364 LHPEAQKKAQAELDAVVGHDRSVKDSDIPKLPYIQAVVKEALRMHPPGPLLSWARLSTEDVNMGDGMCVPAGTTAMVNMWSITHDPNI 451          
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C78A3_SOYBN (Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 3
Query:    9 LNQKVQAKLHAELQAVNSKX---TDADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            L+  VQ+K+  EL AV  K     + DVA   YL AVVKE LR+HPPGPLL WAR S +D  + +G  +PA TTAMVN WAI  D  V
Sbjct:  341 LHPHVQSKVQEELDAVVGKARAVAEDDVAVMTYLPAVVKEVLRLHPPGPLLSWARLSINDTTI-DGYHVPAGTTAMVNTWAICRDPHV 427          
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C76C4_ARATH (Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.996e-11
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 3
Query:   12 NQKVQAKLHAELQAV---NSKXTDADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            N K   K  AE+  V   NS   ++D++  PYLQAVVKE  R+HP  PLL   R + SDV++  G ++P +T  +VN+WAI  D  V
Sbjct:  330 NPKTMVKAQAEMDRVLGQNSVVQESDISGLPYLQAVVKETFRLHPAAPLLV-PRKAESDVEVL-GFMVPKDTQVLVNVWAIGRDPSV 414          
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   30 KLHAELQAV---NSKXTDADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            K  +E++ V   N    ++D+   PYLQA+VKE LR+HP  PL+   R S SDVQ+  G L+P NT  +VN+WAI  D+ V
Sbjct:  338 KAQSEIRQVIGQNGFVQESDIPSLPYLQAIVKETLRLHPAAPLI--PRKSESDVQIM-GFLVPKNTQVVVNVWAIGRDASV 415          
BLAST of C21831 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3
Query:   12 NQKVQAKLHAELQAVNSKXT-----DADVARXPYLQAVVKEALRVHPPGPLLXWARXSTSDVQLSNGMLIPANTTAMVNMWAITHDSQV 263
            +++V  KL AE++A  ++       + D++  PYL+A +KEALR+HPPGPLL     ST+D Q+ +G  IPAN   +VN WAI  D  V
Sbjct:  349 HRRVMKKLQAEVRAYGAEKKLDMIREDDLSSLPYLKASMKEALRLHPPGPLLL-PHYSTADCQI-DGYHIPANPRVLVNGWAIGRDPAV 435          
The following BLAST results are available for this feature:
BLAST of C21831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
C78AB_ORYSJ4.893e-2665.52Cytochrome P450 78A11 OS=Oryza sativa subsp. japon... [more]
C78A1_MAIZE1.090e-2567.86Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C78A4_PINRA1.332e-2357.95Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C78A3_SOYBN3.515e-1653.41Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=... [more]
C76C4_ARATH1.996e-1143.68Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CY... [more]
C76C3_ARATH2.607e-1145.68Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
C71C3_MAIZE5.807e-1143.82Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionC21831 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSH-1R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21831 ID=C21831; Name=C21831; organism=Citrus sinensis; type=EST; length=264bp
GGCACGAGCTGAACCAAAAAGTACAAGCCAAGCTGCACGCTGAGCTCCAA
GCTGTTAACAGCAAANTTACAGATGCTGACGTGGCAAGANTACCCTACTT
ACAGGCGGTCGTCAAAGAAGCTCTTCGCGTCCACCCACCCGGGCCACTCC
TNTNGTGGGCCCGGNTCTCCACGTCAGACGTCCAGCTCAGCAACGGGATG
CTGATACCGGCTAACACCACTGCTATGGTCAACATGTGGGCCATCACCCA
CGACTCTCAGGTGT
back to top