C21832

Overview
NameC21832
Unique NameC21832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1708 contig Csv1_Contig1708:42..297. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.867e-21
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 3
Query:   39 KGPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            KGPGLYS IGKKAR LLY+DY +DHK TVTTY++ GVAIT+SG+KKGELF ADVSTQLK ++
Sbjct:    3 KGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKN 64          
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.136e-19
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   39 KGPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            KGPGLY+ IGKKAR LLYKDYH+D K T++TY+  GVAITSSG KKGELF  DV+TQLK ++
Sbjct:    3 KGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKN 64          
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   39 KGPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            KGPGLY+ IGKKAR LLYKDY +DHK ++TTY+  GV ITSSG KKG+LF ADV+TQLK ++
Sbjct:    3 KGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKN 64          
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   39 KGPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            KGPGLY+ IGKKAR LLY+DY  D K +VTTY+S GVAIT++G  KG LF  DV+TQ+K  +
Sbjct:    3 KGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNN 64          
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 3
Query:   42 GPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            GPGLY  IGKKAR LLY+DY  DHK T+TTYTS GVAIT++  KK +L   ++ +Q+K ++
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKN 63          
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   39 KGPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            KGPGLY+ IGKKAR LLYKD+++D K ++TT++ AGVAITS+G KKG+L   DV+ Q + ++
Sbjct:    3 KGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKN 64          
BLAST of C21832 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 3
Query:   42 GPGLYSXIGKKARXLLYKDYHADHKXTVTTYTSAGVAITSSGVKKGELFXADVSTQLKTRH 224
            GPGLYS IGKKA+ LLY+DY  DHK T+TTYT+ G AIT++  KK +L   ++ +Q+K ++
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKN 63          
The following BLAST results are available for this feature:
BLAST of C21832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VDAC2_SOLTU7.867e-2175.81Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA1.136e-1970.97Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_SOLTU3.305e-1969.35Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_ARATH1.176e-1662.90Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ4.939e-1557.38Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_ARATH4.939e-1558.06Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_WHEAT5.461e-1454.10Mitochondrial outer membrane porin OS=Triticum aes... [more]
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Properties
Property NameValue
Genbank descriptionC21832 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSM-28R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21832 ID=C21832; Name=C21832; organism=Citrus sinensis; type=EST; length=256bp
GGCACGAGCGGCACGACCNCGTNNGATTCGGCAGATGNAAAGGCCCCGGN
CTCTACTCTNAAATCGGCAAGAAAGCCCGANATCTTCTCTACAAGGACTA
CCATGCCGACCACAAGTNCACTGTCACTACTTACACGTCAGCNGGAGTNG
CGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTNGGCTGATGTC
AGCACTCAGTTGAAGACAAGACATCACTACTGATGTAAAGTNGTACTACT
CTAATC
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