C21843

Overview
NameC21843
Unique NameC21843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3050 contig Csv1_Contig3050:330..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21843 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.389e-11
Identity = 41/110 (37.27%), Postives = 53/110 (48.18%), Query Frame = 2
Query:   17 YEPLPKPTNNEPYKGKIWCVAAKVANTTALSSALSYACSQGIKPVTRSNRVNLVLNPVRWCGKQVMPSVLLVSV*ELGG----------TCYFNGXATQTIKDPSHGSCK 316
            + PLPKPTNN PYKG++WCV  + AN T L   L  AC+Q       SN     L P R C + V  S+   +   L             C+FNG A +T  +P +  CK
Sbjct:  372 FNPLPKPTNNVPYKGQVWCVPVEGANETELEETLRMACAQ-------SNTTCAALAPGRECYEPV--SIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCK 472          
The following BLAST results are available for this feature:
BLAST of C21843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EA6_ARATH3.389e-1137.27Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC21843 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSK-11R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21843 ID=C21843; Name=C21843; organism=Citrus sinensis; type=EST; length=355bp
GGCACGAGAGAAGGAGTACGAGCCGCTGCCGAAGCCGACCAATAACGAGC
CGTATAAGGGGAAGATATGGTGCGTGGCAGCTAAAGTAGCCAACACTACT
GCATTGTCATCGGCTCTTTCTTATGCCTGCTCGCAGGGAATAAAACCTGT
GACCCGATCCAACCGGGTAAACCTTGTGCTAAACCCGGTTCGTTGGTGTG
GAAAGCAAGTTATGCCTTCAGTCCTATTGGTCTCAGTTTAGGAACTTGGT
GGGACCTGTTACTTCAATGGGNTCGCCACACAGACCATTAAAGATCCAAG
TCATGGATCCTGCAAGTNCCAAGTGTGACCCTTGAGNTATTATTCCATGG
TGTTN
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