C21844

Overview
NameC21844
Unique NameC21844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length268
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of C21844 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.851e-23
Identity = 41/73 (56.16%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:   11 PARPGWVLXSFIFALYNENQKPGPGTERHFGLLYPNGSHVYEIDLSGNAPEKEYEPLPKPTNNEPYKGKIWCV 229
            P+RPG  + +F+F+L+NENQK G GT+RH+G+L+P+GS +Y++D +G  P   + PLPKPTNN PYKG++WCV
Sbjct:  319 PSRPGLPIPTFVFSLFNENQKSGSGTQRHWGILHPDGSPIYDVDFTGQTPLTGFNPLPKPTNNVPYKGQVWCV 391
The following BLAST results are available for this feature:
BLAST of C21844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EA6_ARATH3.851e-2356.16Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC21844 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-10R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21844 ID=C21844; Name=C21844; organism=Citrus sinensis; type=EST; length=268bp
GGCACGAGCCCCGGCCCGACCCGGATGGGTTTTGCNTTCTTTTATCTTTG
CTCTGTACAACGAGAATCAGAAACCGGGCCCGGGTACGGAGAGGCATTTC
GGGCTATTGTATCCAAACGGGTCGCACGTGTATGAGATTGATTTGAGCGG
AAATGCACCGGAGAAGGAGTACGAGCCGCTGCCGAAGCCGACCAATAACG
AGCCGTATAAGGGGAAGATATGGTGCGTGGCANTAAAGTAGCCAACACTA
CTGCATTGTCATCCGGTC
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