C21849

Overview
NameC21849
Unique NameC21849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21849 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.042e-25
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   10 LAAYSPIAPISIDPEDKRRAKYNILIGTSMSCPHTAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMKSSNNEEAEFAYGSGHINPIEAVNQGL 285
            LAA+  +AP+      +R   +NI+ GTSMSCPH  G+A YVK+++P WSP+AIKSA+MTTA PM +  N +AEFAYGSGH+NP++AV  GL
Sbjct:  500 LAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKAVRPGL 588          
BLAST of C21849 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.480e-23
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   55 DKRRAKYNILIGTSMSCPHTAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMKSSNNEEAEFAYGSGHINPIEAVNQGL 285
            D + +K+ IL GTSM+CPH AGVAAYVKSFHPDW+P+AIKSAI+T+A P+    N++AEFAYG G INP  A + GL
Sbjct:  523 DTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNKDAEFAYGGGQINPRRAASPGL 599          
BLAST of C21849 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   10 LAAYSPIAPISIDPEDKRRAKYNILIGTSMSCPHTAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMK---------SSNNEEAEFAYGSGHINPIEAVNQGL 285
            LAA++  A  +    D RR ++NI+ GTSMSCPH +G+AA +KS HP+WSP+AI+SA+MTTA+            ++      F +G+GH++P  A N GL
Sbjct:  514 LAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGL 614          
The following BLAST results are available for this feature:
BLAST of C21849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CUCM1_CUCME9.042e-2556.52Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH6.480e-2363.64Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
SUBL_ARATH1.398e-1743.56Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC21849 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-1R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21849 ID=C21849; Name=C21849; organism=Citrus sinensis; type=EST; length=341bp
GGCACGAGCCTGGCTGCATATTCACCTATTGCTCCAATATCTATAGACCC
GGAAGATAAAAGGCGTGCTAAATATAATATTCTAATAGGAACCTCCATGT
CCTGCCCGCATACTGCTGGTGTAGCCGCATATGTTAAATCATTTCACCCT
GATTGGTCTCCTTCTGCCATCAAATCAGCTATTATGACTACTGCATGGCC
CATGAAGTCTTCCAACAATGAAGAAGCTGAATTTGCATATGGTTCGGGGC
ATATCAATCCAATTGAAGCTGTAAACCAGGGCTTGTGTATGAACTTTCAA
CAAGCTACATAATATGCTCTGCAGCATTGGTATGATGNGGG
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