C21855

Overview
NameC21855
Unique NameC21855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9307 contig Csv1_Contig9307:31..290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14336_ARATH (14-3-3-like protein GF14 lambda OS=Arabidopsis thaliana GN=GRF6 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.139e-21
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            R+QYVY+AKLAEQAERYEEMV+FM+ LVT +TPA ELTVEERNLLSVAYKNVIGS RA
Sbjct:    7 RDQYVYMAKLAEQAERYEEMVQFMEQLVTGATPAEELTVEERNLLSVAYKNVIGSLRA 64          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14338_ARATH (14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.388e-20
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 3
Query:   48 TPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            T +R+QYVY+AKLAEQAERYEEMV+FM+ LV+ +TPA ELTVEERNLLSVAYKNVIGS RA
Sbjct:    4 TLSRDQYVYMAKLAEQAERYEEMVQFMEQLVSGATPAGELTVEERNLLSVAYKNVIGSLRA 64          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14310_SOLLC (14-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.093e-20
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +REQ +YLAKLAEQAERYEEMV+FMD LV +STPA ELTVEERNLLSVAYKNVIGS RA
Sbjct:   10 SREQCLYLAKLAEQAERYEEMVQFMDKLVLNSTPAGELTVEERNLLSVAYKNVIGSLRA 68          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433B_SOYBN (14-3-3-like protein B (Fragment) OS=Glycine max GN=GF14B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.535e-19
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            REQYVYLA ++EQAERYEEMV+FM  +V  STPA+ELTVEERNLLSVAYKNVIGS RA
Sbjct:    6 REQYVYLANVSEQAERYEEMVEFMQKVVVGSTPASELTVEERNLLSVAYKNVIGSLRA 63          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433D_TOBAC (14-3-3-like protein D OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            TREQ +YLAKLAEQAERYEEMVKFMD LV  S  ++ELTVEERNLLSVAYKNVIGS RA
Sbjct:    8 TREQCLYLAKLAEQAERYEEMVKFMDRLVAVSA-SSELTVEERNLLSVAYKNVIGSLRA 65          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14331_SOLLC (14-3-3 protein 1 OS=Solanum lycopersicum GN=TFT1 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            TREQ +YLAKLAEQAERYEEMVKFMD LV  S  ++ELTVEERNLLSVAYKNVIGS RA
Sbjct:    8 TREQCLYLAKLAEQAERYEEMVKFMDKLVIGS-GSSELTVEERNLLSVAYKNVIGSLRA 65          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 1433F_TOBAC (14-3-3-like protein F OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.459e-17
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            +R+++VY+AKLAEQAERYEEMV FM+ +VT++    ELT+EERNLLSVAYKNVIG+ RA
Sbjct:    4 SRDEFVYMAKLAEQAERYEEMVDFMEKVVTAADGGEELTIEERNLLSVAYKNVIGARRA 62          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14336_SOLLC (14-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.459e-17
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            M +P RE+ VY+AKLAEQAERYEEMV+FM+ +V ++  A ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    1 MASP-REENVYMAKLAEQAERYEEMVEFMEKVVAAADGAEELTVEERNLLSVAYKNVIGARRA 62          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14335_SOLTU (14-3-3-like protein 16R OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.459e-17
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSXRA 230
            M +P RE+ VY+AKLAEQAERYEEMV+FM+ +V ++  A ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    1 MASP-REENVYMAKLAEQAERYEEMVEFMEKVVAAADGAEELTVEERNLLSVAYKNVIGARRA 62          
BLAST of C21855 vs. ExPASy Swiss-Prot
Match: 14331_ORYSJ (14-3-3-like protein GF14-A OS=Oryza sativa subsp. japonica GN=GF14A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.130e-17
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   39 AMGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTP--ATELTVEERNLLSVAYKNVIGSXRA 230
            A G  TRE+ VY+AKLAEQAERYEEMV+FM+ +VT++      ELTVEERNLLSVAYKNVIG+ RA
Sbjct:    4 AAGGGTREEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERNLLSVAYKNVIGARRA 69          
The following BLAST results are available for this feature:
BLAST of C21855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
14336_ARATH8.139e-2184.4814-3-3-like protein GF14 lambda OS=Arabidopsis tha... [more]
14338_ARATH1.388e-2080.3314-3-3-like protein GF14 kappa OS=Arabidopsis thal... [more]
14310_SOLLC3.093e-2084.7514-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10... [more]
1433B_SOYBN1.535e-1981.0314-3-3-like protein B (Fragment) OS=Glycine max GN... [more]
1433D_TOBAC4.938e-1883.0514-3-3-like protein D OS=Nicotiana tabacum PE=2 SV... [more]
14331_SOLLC4.938e-1883.0514-3-3 protein 1 OS=Solanum lycopersicum GN=TFT1 P... [more]
1433F_TOBAC5.459e-1769.4914-3-3-like protein F OS=Nicotiana tabacum PE=2 SV... [more]
14336_SOLLC5.459e-1771.4314-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 P... [more]
14335_SOLTU5.459e-1771.4314-3-3-like protein 16R OS=Solanum tuberosum PE=2 ... [more]
14331_ORYSJ7.130e-1769.7014-3-3-like protein GF14-A OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC21855 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-33R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21855 ID=C21855; Name=C21855; organism=Citrus sinensis; type=EST; length=259bp
GGCACGANTCCAGTTAACTTTACAGTTTCTGCAATTNTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCCGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAAGTTCATGGACAGCCTCGTCACTTCCTCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTCCTCTCCGTTGCT
TACAAGAACGTCATCGGCTCTNTTCGCGCCGGTGGNGTATTATCTCCTCT
ATCGAGCAG
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