C21892

Overview
NameC21892
Unique NameC21892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21892 vs. ExPASy Swiss-Prot
Match: ARI2_ARATH (Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.263e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   34 LYRYMHYHNRYKAHTDSFKLESKLKETVLEKVSISEERESRLRDFSWVTNGLYRLFRSRRVLSYSYPFDXICLGRAL 264
            L RYMHYHNRYKAH DS KLE+KL   + +KVSISE+RE +L+DFSW TNGL+RLFRSRRVLSYSYPF     G  L
Sbjct:  348 LKRYMHYHNRYKAHIDSSKLEAKLSNNISKKVSISEKRELQLKDFSWATNGLHRLFRSRRVLSYSYPFAFYMFGDEL 424          
BLAST of C21892 vs. ExPASy Swiss-Prot
Match: ARI1_ARATH (Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.819e-24
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   34 LYRYMHYHNRYKAHTDSFKLESKLKETVLEKVSISEERESRLRDFSWVTNGLYRLFRSRRVLSYSYPFDXICLGRAL 264
            L RY HYH+RYKAHTDS KLE KL++T+ EKVS SE+RE +L+DFSWVTNGL RLFRSRRVLSYSY F     G  +
Sbjct:  347 LNRYTHYHHRYKAHTDSSKLEDKLRDTIHEKVSKSEKRELKLKDFSWVTNGLDRLFRSRRVLSYSYAFAYYMFGEEM 423          
BLAST of C21892 vs. ExPASy Swiss-Prot
Match: ARI4_ARATH (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.039e-17
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   34 LYRYMHYHNRYKAHTDSFKLESKLKETVLEKVSISEERESR--LRDFSWVTNGLYRLFRSRRVLSYSYPFDXICLGRAL 264
            L RY HYH RYKAH DS KLE KLK+++L+K  ++ E + +   +++SW+ + + RLFRSRR+LSYSYPF     G+ L
Sbjct:  341 LDRYTHYHYRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVFKEYSWIIDAVNRLFRSRRILSYSYPFVFYMFGKEL 419          
BLAST of C21892 vs. ExPASy Swiss-Prot
Match: ARI3_ARATH (Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.618e-16
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   34 LYRYMHYHNRYKAHTDSFKLESKLKETVLEK-VSISEERESRL-RDFSWVTNGLYRLFRSRRVLSYSYPFDXICLGRAL 264
            L RY HYH RYKAH DS KLE KL++++LEK VS SE ++ ++ +++SWVT+ + RLF SRR+LS SYPF     G  L
Sbjct:  345 LDRYTHYHYRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVFKEYSWVTDAVNRLFISRRILSQSYPFAFYMFGEEL 423          
The following BLAST results are available for this feature:
BLAST of C21892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARI2_ARATH5.263e-2570.13Probable E3 ubiquitin-protein ligase ARI2 OS=Arabi... [more]
ARI1_ARATH5.819e-2468.83Probable E3 ubiquitin-protein ligase ARI1 OS=Arabi... [more]
ARI4_ARATH4.039e-1750.63Putative E3 ubiquitin-protein ligase ARI4 OS=Arabi... [more]
ARI3_ARATH2.618e-1654.43Probable E3 ubiquitin-protein ligase ARI3 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC21892 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSM-26R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21892 ID=C21892; Name=C21892; organism=Citrus sinensis; type=EST; length=285bp
GGCACGAGAAAAGACTGAACGGGCTAAGCGAGACTTTATCGGTATATGCA
TTATCATAACCGTTACAAAGCTCATACGGATTCCTTTAAGCTCGAAAGCA
AACTTAAGGAAACTGTCCTAGAAAAGGTGTCAATATCAGAGGAAAGGGAA
TCAAGGCTCAGAGATTTTAGTTGGGTAACTAATGGATTGTATAGACTTTT
CAGATCAAGGCGAGTCCTTTCCTATTCCTACCCATTTGATTTNATATGTT
TGGGGAGAGCTCTTCAAGGATGAGATACAGATGAG
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