C21899

Overview
NameC21899
Unique NameC21899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4056 contig Csv1_Contig4056:626..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.549e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.549e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.549e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.549e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.549e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.549e-22
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.247e-21
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++VRK G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.778e-21
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP   +   E GKVVGV SEGE A CK+++CDP Y+P++V+K G+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.072e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP  ++   + GKVVGV SEGE A CK+++CDP Y+ ++V KVG+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQI 319
[Close]
BLAST of C21899 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.072e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 2 
Query:   23 SAVYGGTYXLNKPECKVEFDEEGKVVGVTSEGETAXCKKVVCDPXYLPNKVRKVGRVARAIAIXSHPIPNTNDSHSVQV 259
            SA+YGGTY LNKP  ++   + GKVVGV SEGE A CK+++CDP Y+ ++V KVG+V R I I SHPI NTND++S Q+
Sbjct:  242 SAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQI 319
The following BLAST results are available for this feature:
BLAST of C21899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT9.549e-2260.76Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY9.549e-2260.76Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR9.549e-2260.76Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA9.549e-2260.76Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN9.549e-2260.76Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_CANFA9.549e-2260.76Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN1.247e-2160.76Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE2.778e-2159.49Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIB_RAT3.072e-2058.23Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE3.072e-2058.23Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC21899 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSH-23R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21899 ID=C21899; Name=C21899; organism=Citrus sinensis; type=EST; length=263bp
GGCACGAGCTTTGCTNGCNTTTAGTGCTGTTTATGGTGGGACGTATATNT
TGAATAAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGGTAAAGTAGTC
GGTGTCACGTCAGAAGGGGAAACTGCAAANTGCAAGAAAGTTGTTTGTGA
TCCTNCCTATTTGCCCAACAAGGTGAGGAAGGTTGGCAGGGTTGCTAGGG
CAATCGCTATTATNAGCCACCCAATCCCAAACACCAATGATTCCCATTCA
GTGCAGGTTATNC
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