C21900

Overview
NameC21900
Unique NameC21900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length241
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2047 contig Csv1_Contig2047:61..301. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.500e-27
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            MPAGHG+R+RTRD FARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+ KGMPHKFYHGR
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.500e-27
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            MPAGHG+R+RTRD FARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+ KGMPHKFYHGR
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.836e-18
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.654e-16
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            M   HG RSRTR  F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.913e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            MP   GLR+RTR  F+R FR  G +  +T+LRT+++GDYVD+K  G V KGMPHKFYHGR
Sbjct:    1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.913e-16
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            M   HG RSRTR  F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.245e-14
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   61 MPAGHGLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            MP  +G R+RTR  FAR F+  G + LSTYL  +KIG+YVDV  N AV KGMP K+YHGR
Sbjct:    1 MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.233e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   76 GLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            G R  TR  F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60          
BLAST of C21900 vs. ExPASy Swiss-Prot
Match: RL21_MOUSE (60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.233e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   76 GLRSRTRDXFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVXKGMPHKFYHGR 240
            G R  TR  F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60          
The following BLAST results are available for this feature:
BLAST of C21900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL212_ARATH1.500e-2788.3360S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH1.500e-2788.3360S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21B_SCHPO2.836e-1866.6760S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_SCHPO2.836e-1866.6760S ribosomal protein L21-A OS=Schizosaccharomyces... [more]
RL21A_YEAST2.654e-1661.6760S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21_DICDI5.913e-1660.0060S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21B_YEAST5.913e-1660.0060S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_CYAPA3.245e-1460.0060S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21_RAT1.233e-1361.8260S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]
RL21_MOUSE1.233e-1361.8260S ribosomal protein L21 OS=Mus musculus GN=Rpl21... [more]

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Properties
Property NameValue
Genbank descriptionC21900 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSH-40R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21900 ID=C21900; Name=C21900; organism=Citrus sinensis; type=EST; length=241bp
GGCACGAGCTCACATCTCCTTCCTCTTCTCCAGAGAGAAAAAAGGACCAG
TGACTCAAACATGCCGGCCGGTCACGGTTTGAGGTCCCGAACAAGGGATT
TNTTCGCACGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTCCACTTAC
CTTAGGACTTACAAAATCGGCGACTACGTTGACGTCAAAGTGAACGGCGC
CGTTNACAAAGGTATGCCCCACAAGTTCTACCATGGACGTA
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