C21903

Overview
NameC21903
Unique NameC21903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9307 contig Csv1_Contig9307:31..246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14336_ARATH (14-3-3-like protein GF14 lambda OS=Arabidopsis thaliana GN=GRF6 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.380e-17
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            R+QYVY+AKLAEQAERYEEMV FM+ LVT  TPA ELTVEERNLLSVA KNVI
Sbjct:    7 RDQYVYMAKLAEQAERYEEMVQFMEQLVTGATPAEELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14338_ARATH (14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.059e-17
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 3
Query:   48 TPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            T +R+QYVY+AKLAEQAERYEEMV FM+ LV+  TPA ELTVEERNLLSVA KNVI
Sbjct:    4 TLSRDQYVYMAKLAEQAERYEEMVQFMEQLVSGATPAGELTVEERNLLSVAYKNVI 59          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14310_SOLLC (14-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +REQ +YLAKLAEQAERYEEMV FMD LV + TPA ELTVEERNLLSVA KNVI
Sbjct:   10 SREQCLYLAKLAEQAERYEEMVQFMDKLVLNSTPAGELTVEERNLLSVAYKNVI 63          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433B_SOYBN (14-3-3-like protein B (Fragment) OS=Glycine max GN=GF14B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.997e-16
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 3
Query:   57 REQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            REQYVYLA ++EQAERYEEMV FM  +V   TPA+ELTVEERNLLSVA KNVI
Sbjct:    6 REQYVYLANVSEQAERYEEMVEFMQKVVVGSTPASELTVEERNLLSVAYKNVI 58          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433F_TOBAC (14-3-3-like protein F OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.200e-14
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            +R+++VY+AKLAEQAERYEEMV FM+ +VT+     ELT+EERNLLSVA KNVI
Sbjct:    4 SRDEFVYMAKLAEQAERYEEMVDFMEKVVTAADGGEELTIEERNLLSVAYKNVI 57          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 1433D_TOBAC (14-3-3-like protein D OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.200e-14
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            TREQ +YLAKLAEQAERYEEMV FMD LV + + ++ELTVEERNLLSVA KNVI
Sbjct:    8 TREQCLYLAKLAEQAERYEEMVKFMDRLV-AVSASSELTVEERNLLSVAYKNVI 60          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14331_SOLLC (14-3-3 protein 1 OS=Solanum lycopersicum GN=TFT1 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.486e-14
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 3
Query:   54 TREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            TREQ +YLAKLAEQAERYEEMV FMD LV   + ++ELTVEERNLLSVA KNVI
Sbjct:    8 TREQCLYLAKLAEQAERYEEMVKFMDKLVIG-SGSSELTVEERNLLSVAYKNVI 60          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14336_SOLLC (14-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.165e-14
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M +P RE+ VY+AKLAEQAERYEEMV FM+ +V +   A ELTVEERNLLSVA KNVI
Sbjct:    1 MASP-REENVYMAKLAEQAERYEEMVEFMEKVVAAADGAEELTVEERNLLSVAYKNVI 57          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14335_SOLTU (14-3-3-like protein 16R OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.165e-14
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   42 MGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTPATELTVEERNLLSVAXKNVI 215
            M +P RE+ VY+AKLAEQAERYEEMV FM+ +V +   A ELTVEERNLLSVA KNVI
Sbjct:    1 MASP-REENVYMAKLAEQAERYEEMVEFMEKVVAAADGAEELTVEERNLLSVAYKNVI 57          
BLAST of C21903 vs. ExPASy Swiss-Prot
Match: 14331_ORYSJ (14-3-3-like protein GF14-A OS=Oryza sativa subsp. japonica GN=GF14A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.165e-14
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   36 SAMGTPTREQYVYLAKLAEQAERYEEMVXFMDSLVTSXTP--ATELTVEERNLLSVAXKNVI 215
            +A G  TRE+ VY+AKLAEQAERYEEMV FM+ +VT+       ELTVEERNLLSVA KNVI
Sbjct:    3 AAAGGGTREEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERNLLSVAYKNVI 64          
The following BLAST results are available for this feature:
BLAST of C21903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
14336_ARATH2.380e-1783.0214-3-3-like protein GF14 lambda OS=Arabidopsis tha... [more]
14338_ARATH4.059e-1778.5714-3-3-like protein GF14 kappa OS=Arabidopsis thal... [more]
14310_SOLLC2.014e-1681.4814-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10... [more]
1433B_SOYBN9.997e-1677.3614-3-3-like protein B (Fragment) OS=Glycine max GN... [more]
1433F_TOBAC4.200e-1468.5214-3-3-like protein F OS=Nicotiana tabacum PE=2 SV... [more]
1433D_TOBAC4.200e-1477.7814-3-3-like protein D OS=Nicotiana tabacum PE=2 SV... [more]
14331_SOLLC5.486e-1477.7814-3-3 protein 1 OS=Solanum lycopersicum GN=TFT1 P... [more]
14336_SOLLC7.165e-1470.6914-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 P... [more]
14335_SOLTU7.165e-1470.6914-3-3-like protein 16R OS=Solanum tuberosum PE=2 ... [more]
14331_ORYSJ7.165e-1467.7414-3-3-like protein GF14-A OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC21903 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSG-32R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21903 ID=C21903; Name=C21903; organism=Citrus sinensis; type=EST; length=216bp
GGCACGAGTCCAGTTAACTTTACAGTTTCTGCAATTCTGCTATGGGAACC
CCGACGAGAGAGCAATACGTTTACCTGGCGAAACTCGCNGAGCAAGCNGA
GCGCTATGAAGAGATGGTTAANTTCATGGACAGCCTCGTCACTTCCNCCA
CTCCGGCGACTGAACTCACCGTCGAGGAGCGCAACCTTCTCTCCGTTGCT
NACAAGAACGTCATCG
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